| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is yggG [H]
Identifier: 124265286
GI number: 124265286
Start: 88219
End: 89241
Strand: Reverse
Name: yggG [H]
Synonym: Mpe_A0093
Alternate gene names: 124265286
Gene position: 89241-88219 (Counterclockwise)
Preceding gene: 124265287
Following gene: 124265281
Centisome position: 2.21
GC content: 71.16
Gene sequence:
>1023_bases ATGAGCCAGTTCATCTCGTCACCCCGCTACCACTGCAGCCTGTGCGCCGCCTTCGCGCGACTGAACGCACCGGAGAACGC CGTGGACACCCCTACGCCCGCCCGCCCCGGGCGTCGCCGCTTCAATGCCGCGCTGGCTGGCGCGGGCGCCGCGCTGCTGC TGCCGGCTGCCGGCGCGCGCGAGGGCGTCGATGTCGGCAAGCAGTCGAGCTTCTCGAAGCTGGTGCCGGCCGAGCAGGTC GAGCAGGCCGCGACGCAGCAGTACGCGCAACTGCTGCAGGAGGCCCGCAACAAGAACGCGCTGGTGGGCGCCGACGACAC GCAGACGGTGCGGCTGCGCGCCATCGCGCGGCGCATCATCCCGTTCACGCCTGAATGGAACGGGCGCGCGCCCGGCTGGA AGTGGGAGGTGAACCTGCTGGCCAGCAAGCAGATCAACGCCTTCTGCATGCCGGGCGGCAAGATCGCCTTCTACACGGGC CTGATCGAACAACTCAAGCTGACCGACGACGAGGTCTCGATGGTGATGGGCCACGAGGTCGCGCACGCGCTGCGTGAGCA CGCCCGAGAGCGCATGGGCAAGTCGACCGCCACCAACATCGGCCTGGAGATCGGCGCGGCCCTGCTCGGGCTGGGCAATG CCAGCCGCACCCTCGCCGGCATGGGCGCGCAGCTGCTGCAGCTCAAGTTCAGCCGCGACGACGAGTCCGAGGCCGACCTG GTGGGCATGGAGCTGGCTGCGCGCGCCGGCTACGACCCCCGCTCCGGCGTGAGCCTGTGGACCAAGATGGGCCAGGCCAC CGGCGGCGGGGGTGGGGGCAGCGGCAACAAGCTGGCCGAGTACGGCTCCACCCACCCGCAGGGGCCGACCCGCATCCGCG ACATCGAGGCCAACCTGCCGAAGGTGCTGCCGCTGTACGAGCGCGCGCCCAAGCCACCGCAACGCTGGGACGCCGGTTTG ACCGACAGCGGTGACCGCAAGGCCACCAAGCCCGCCACGCCGACGCGCGAGCAGTCGCGCTGA
Upstream 100 bases:
>100_bases ACTTCTTCCTGACGTTCTGGCTGTCGTTCCCGGCCTACCTGCTGTTGCCGTCGGTACGCCGGATGCTGGAACGCGAAGCC GCGCCCGGAGTCTCATCGCC
Downstream 100 bases:
>100_bases GCGCAGGGGCGCGAGCGCGGGCGCTCAGACGTCGCGCACGTAGGGGTTGTGGCGCCGCTCGCGGCCGAAGCTGCTCTCCG GCCCGTGGCCGGGGATGAAC
Product: putative signal peptide protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 340; Mature: 339
Protein sequence:
>340_residues MSQFISSPRYHCSLCAAFARLNAPENAVDTPTPARPGRRRFNAALAGAGAALLLPAAGAREGVDVGKQSSFSKLVPAEQV EQAATQQYAQLLQEARNKNALVGADDTQTVRLRAIARRIIPFTPEWNGRAPGWKWEVNLLASKQINAFCMPGGKIAFYTG LIEQLKLTDDEVSMVMGHEVAHALREHARERMGKSTATNIGLEIGAALLGLGNASRTLAGMGAQLLQLKFSRDDESEADL VGMELAARAGYDPRSGVSLWTKMGQATGGGGGGSGNKLAEYGSTHPQGPTRIRDIEANLPKVLPLYERAPKPPQRWDAGL TDSGDRKATKPATPTREQSR
Sequences:
>Translated_340_residues MSQFISSPRYHCSLCAAFARLNAPENAVDTPTPARPGRRRFNAALAGAGAALLLPAAGAREGVDVGKQSSFSKLVPAEQV EQAATQQYAQLLQEARNKNALVGADDTQTVRLRAIARRIIPFTPEWNGRAPGWKWEVNLLASKQINAFCMPGGKIAFYTG LIEQLKLTDDEVSMVMGHEVAHALREHARERMGKSTATNIGLEIGAALLGLGNASRTLAGMGAQLLQLKFSRDDESEADL VGMELAARAGYDPRSGVSLWTKMGQATGGGGGGSGNKLAEYGSTHPQGPTRIRDIEANLPKVLPLYERAPKPPQRWDAGL TDSGDRKATKPATPTREQSR >Mature_339_residues SQFISSPRYHCSLCAAFARLNAPENAVDTPTPARPGRRRFNAALAGAGAALLLPAAGAREGVDVGKQSSFSKLVPAEQVE QAATQQYAQLLQEARNKNALVGADDTQTVRLRAIARRIIPFTPEWNGRAPGWKWEVNLLASKQINAFCMPGGKIAFYTGL IEQLKLTDDEVSMVMGHEVAHALREHARERMGKSTATNIGLEIGAALLGLGNASRTLAGMGAQLLQLKFSRDDESEADLV GMELAARAGYDPRSGVSLWTKMGQATGGGGGGSGNKLAEYGSTHPQGPTRIRDIEANLPKVLPLYERAPKPPQRWDAGLT DSGDRKATKPATPTREQSR
Specific function: Seems to regulate the expression of speB [H]
COG id: COG0501
COG function: function code O; Zn-dependent protease with chaperone function
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M48B family [H]
Homologues:
Organism=Homo sapiens, GI21686999, Length=255, Percent_Identity=27.4509803921569, Blast_Score=92, Evalue=8e-19, Organism=Escherichia coli, GI87082185, Length=179, Percent_Identity=29.608938547486, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322940, Length=186, Percent_Identity=29.0322580645161, Blast_Score=90, Evalue=5e-19,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001915 [H]
Pfam domain/function: PF01435 Peptidase_M48 [H]
EC number: 3.4.24.- [C]
Molecular weight: Translated: 36422; Mature: 36290
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQFISSPRYHCSLCAAFARLNAPENAVDTPTPARPGRRRFNAALAGAGAALLLPAAGAR CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCC EGVDVGKQSSFSKLVPAEQVEQAATQQYAQLLQEARNKNALVGADDTQTVRLRAIARRII CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHC PFTPEWNGRAPGWKWEVNLLASKQINAFCMPGGKIAFYTGLIEQLKLTDDEVSMVMGHEV CCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH AHALREHARERMGKSTATNIGLEIGAALLGLGNASRTLAGMGAQLLQLKFSRDDESEADL HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHEECCCCCCCCHHH VGMELAARAGYDPRSGVSLWTKMGQATGGGGGGSGNKLAEYGSTHPQGPTRIRDIEANLP HHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEHHCCCC KVLPLYERAPKPPQRWDAGLTDSGDRKATKPATPTREQSR CCCHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SQFISSPRYHCSLCAAFARLNAPENAVDTPTPARPGRRRFNAALAGAGAALLLPAAGAR CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCC EGVDVGKQSSFSKLVPAEQVEQAATQQYAQLLQEARNKNALVGADDTQTVRLRAIARRII CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHC PFTPEWNGRAPGWKWEVNLLASKQINAFCMPGGKIAFYTGLIEQLKLTDDEVSMVMGHEV CCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH AHALREHARERMGKSTATNIGLEIGAALLGLGNASRTLAGMGAQLLQLKFSRDDESEADL HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHEECCCCCCCCHHH VGMELAARAGYDPRSGVSLWTKMGQATGGGGGGSGNKLAEYGSTHPQGPTRIRDIEANLP HHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEHHCCCC KVLPLYERAPKPPQRWDAGLTDSGDRKATKPATPTREQSR CCCHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2153656; 9278503; 1310091 [H]