Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is yggG [H]

Identifier: 124265286

GI number: 124265286

Start: 88219

End: 89241

Strand: Reverse

Name: yggG [H]

Synonym: Mpe_A0093

Alternate gene names: 124265286

Gene position: 89241-88219 (Counterclockwise)

Preceding gene: 124265287

Following gene: 124265281

Centisome position: 2.21

GC content: 71.16

Gene sequence:

>1023_bases
ATGAGCCAGTTCATCTCGTCACCCCGCTACCACTGCAGCCTGTGCGCCGCCTTCGCGCGACTGAACGCACCGGAGAACGC
CGTGGACACCCCTACGCCCGCCCGCCCCGGGCGTCGCCGCTTCAATGCCGCGCTGGCTGGCGCGGGCGCCGCGCTGCTGC
TGCCGGCTGCCGGCGCGCGCGAGGGCGTCGATGTCGGCAAGCAGTCGAGCTTCTCGAAGCTGGTGCCGGCCGAGCAGGTC
GAGCAGGCCGCGACGCAGCAGTACGCGCAACTGCTGCAGGAGGCCCGCAACAAGAACGCGCTGGTGGGCGCCGACGACAC
GCAGACGGTGCGGCTGCGCGCCATCGCGCGGCGCATCATCCCGTTCACGCCTGAATGGAACGGGCGCGCGCCCGGCTGGA
AGTGGGAGGTGAACCTGCTGGCCAGCAAGCAGATCAACGCCTTCTGCATGCCGGGCGGCAAGATCGCCTTCTACACGGGC
CTGATCGAACAACTCAAGCTGACCGACGACGAGGTCTCGATGGTGATGGGCCACGAGGTCGCGCACGCGCTGCGTGAGCA
CGCCCGAGAGCGCATGGGCAAGTCGACCGCCACCAACATCGGCCTGGAGATCGGCGCGGCCCTGCTCGGGCTGGGCAATG
CCAGCCGCACCCTCGCCGGCATGGGCGCGCAGCTGCTGCAGCTCAAGTTCAGCCGCGACGACGAGTCCGAGGCCGACCTG
GTGGGCATGGAGCTGGCTGCGCGCGCCGGCTACGACCCCCGCTCCGGCGTGAGCCTGTGGACCAAGATGGGCCAGGCCAC
CGGCGGCGGGGGTGGGGGCAGCGGCAACAAGCTGGCCGAGTACGGCTCCACCCACCCGCAGGGGCCGACCCGCATCCGCG
ACATCGAGGCCAACCTGCCGAAGGTGCTGCCGCTGTACGAGCGCGCGCCCAAGCCACCGCAACGCTGGGACGCCGGTTTG
ACCGACAGCGGTGACCGCAAGGCCACCAAGCCCGCCACGCCGACGCGCGAGCAGTCGCGCTGA

Upstream 100 bases:

>100_bases
ACTTCTTCCTGACGTTCTGGCTGTCGTTCCCGGCCTACCTGCTGTTGCCGTCGGTACGCCGGATGCTGGAACGCGAAGCC
GCGCCCGGAGTCTCATCGCC

Downstream 100 bases:

>100_bases
GCGCAGGGGCGCGAGCGCGGGCGCTCAGACGTCGCGCACGTAGGGGTTGTGGCGCCGCTCGCGGCCGAAGCTGCTCTCCG
GCCCGTGGCCGGGGATGAAC

Product: putative signal peptide protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MSQFISSPRYHCSLCAAFARLNAPENAVDTPTPARPGRRRFNAALAGAGAALLLPAAGAREGVDVGKQSSFSKLVPAEQV
EQAATQQYAQLLQEARNKNALVGADDTQTVRLRAIARRIIPFTPEWNGRAPGWKWEVNLLASKQINAFCMPGGKIAFYTG
LIEQLKLTDDEVSMVMGHEVAHALREHARERMGKSTATNIGLEIGAALLGLGNASRTLAGMGAQLLQLKFSRDDESEADL
VGMELAARAGYDPRSGVSLWTKMGQATGGGGGGSGNKLAEYGSTHPQGPTRIRDIEANLPKVLPLYERAPKPPQRWDAGL
TDSGDRKATKPATPTREQSR

Sequences:

>Translated_340_residues
MSQFISSPRYHCSLCAAFARLNAPENAVDTPTPARPGRRRFNAALAGAGAALLLPAAGAREGVDVGKQSSFSKLVPAEQV
EQAATQQYAQLLQEARNKNALVGADDTQTVRLRAIARRIIPFTPEWNGRAPGWKWEVNLLASKQINAFCMPGGKIAFYTG
LIEQLKLTDDEVSMVMGHEVAHALREHARERMGKSTATNIGLEIGAALLGLGNASRTLAGMGAQLLQLKFSRDDESEADL
VGMELAARAGYDPRSGVSLWTKMGQATGGGGGGSGNKLAEYGSTHPQGPTRIRDIEANLPKVLPLYERAPKPPQRWDAGL
TDSGDRKATKPATPTREQSR
>Mature_339_residues
SQFISSPRYHCSLCAAFARLNAPENAVDTPTPARPGRRRFNAALAGAGAALLLPAAGAREGVDVGKQSSFSKLVPAEQVE
QAATQQYAQLLQEARNKNALVGADDTQTVRLRAIARRIIPFTPEWNGRAPGWKWEVNLLASKQINAFCMPGGKIAFYTGL
IEQLKLTDDEVSMVMGHEVAHALREHARERMGKSTATNIGLEIGAALLGLGNASRTLAGMGAQLLQLKFSRDDESEADLV
GMELAARAGYDPRSGVSLWTKMGQATGGGGGGSGNKLAEYGSTHPQGPTRIRDIEANLPKVLPLYERAPKPPQRWDAGLT
DSGDRKATKPATPTREQSR

Specific function: Seems to regulate the expression of speB [H]

COG id: COG0501

COG function: function code O; Zn-dependent protease with chaperone function

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M48B family [H]

Homologues:

Organism=Homo sapiens, GI21686999, Length=255, Percent_Identity=27.4509803921569, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI87082185, Length=179, Percent_Identity=29.608938547486, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6322940, Length=186, Percent_Identity=29.0322580645161, Blast_Score=90, Evalue=5e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 36422; Mature: 36290

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFISSPRYHCSLCAAFARLNAPENAVDTPTPARPGRRRFNAALAGAGAALLLPAAGAR
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCC
EGVDVGKQSSFSKLVPAEQVEQAATQQYAQLLQEARNKNALVGADDTQTVRLRAIARRII
CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHC
PFTPEWNGRAPGWKWEVNLLASKQINAFCMPGGKIAFYTGLIEQLKLTDDEVSMVMGHEV
CCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
AHALREHARERMGKSTATNIGLEIGAALLGLGNASRTLAGMGAQLLQLKFSRDDESEADL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHEECCCCCCCCHHH
VGMELAARAGYDPRSGVSLWTKMGQATGGGGGGSGNKLAEYGSTHPQGPTRIRDIEANLP
HHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEHHCCCC
KVLPLYERAPKPPQRWDAGLTDSGDRKATKPATPTREQSR
CCCHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQFISSPRYHCSLCAAFARLNAPENAVDTPTPARPGRRRFNAALAGAGAALLLPAAGAR
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCC
EGVDVGKQSSFSKLVPAEQVEQAATQQYAQLLQEARNKNALVGADDTQTVRLRAIARRII
CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHC
PFTPEWNGRAPGWKWEVNLLASKQINAFCMPGGKIAFYTGLIEQLKLTDDEVSMVMGHEV
CCCCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
AHALREHARERMGKSTATNIGLEIGAALLGLGNASRTLAGMGAQLLQLKFSRDDESEADL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHEECCCCCCCCHHH
VGMELAARAGYDPRSGVSLWTKMGQATGGGGGGSGNKLAEYGSTHPQGPTRIRDIEANLP
HHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEEHHCCCC
KVLPLYERAPKPPQRWDAGLTDSGDRKATKPATPTREQSR
CCCHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2153656; 9278503; 1310091 [H]