| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is mrdA [H]
Identifier: 124265273
GI number: 124265273
Start: 75419
End: 77530
Strand: Reverse
Name: mrdA [H]
Synonym: Mpe_A0080
Alternate gene names: 124265273
Gene position: 77530-75419 (Counterclockwise)
Preceding gene: 124265274
Following gene: 124265272
Centisome position: 1.92
GC content: 68.89
Gene sequence:
>2112_bases GTGACCGAACTCAAGAACGTCGACCAGGAGCTGGGCCGCTTCCGGCTGCGCCTGATCGCCGCCGGCGCGCTGGTGCTGTT CGGCTTCGGGCTGGTGACGGCGCGCCTGGTCACGCTGCAGGTGCTGCGGCACGACGAGCTGTCCACGCGCGCCGAGAGCA ACCGCATCACGGTACTGCCGATCACGCCGAACCGCGGCCTGATCCTCGACCGCAACGGCGTCGTGCTGGCGAACAACTAC TCGGCCTACACGCTGGAGCTCACGCCGTCGAAGATCGACGACCTGGAGGGCACCATCGATGCGCTGCAGGAAGTGATCGA CATCACGACGCGCGACCGTCGCCGCTTCAAGCGCATGATGGACGACGCCAAGAGCTTCGAGTCCCTGCCGATCCGCACCA AGCTCAGCGACGAGGAGGTGGCGCGTTTCACCGCGCAGCGTTTCCGCTTCCCCGGGGTCGACATCAAGGCGCGGCTGTTC CGCAACTACCCCTATGGCGAGCTCGGCAGCCATGTGCTGGGCTACATCGGCCGCATCAACCAGGCCGAGAAGGACGCGAT CGACGAGACCGACGATGCGGCCAACTACAAGGGCACCGACTACATCGGCAAGCTCGGCATCGAGCAGAAGTACGAGGCCG AGCTGCACGGCATCACCGGCTTCGAGGAGGTCGAGACCAGCGCCTCGGGCCGCGCGGTGCGGCGCCTGCGGGCCAGCCCG CCGACGCCGGGCAACACGGTGCGGCTGTCGATCGACATCAAGCTGCAGGCGATGGTCGAGCAGCTGTTCGGCGACCGGCG CGGCGCGCTGGTCGCGATCGACCCGCGCTCCGGCGAGGTGCTGGCCTTCGTCAGCAAGCCGACCTTCGACCCCAACCTGT TCGTCGACGGCATCGATTCGGAGAGCTGGAAGGAGCTCAACGAGTCGATCGACAAGCCCCTGCTGAACCGCGCCCTGCGC GGCACCTACCCGCCCGGCTCGACCTTCAAGCCCTTCATGGCGATCGCCGCGCTGGAATCCGGCAAGCGCACGCCGCAGCA GACCACCTACGACAACGGCGTCTTCATGTTCGGCAACCACCGCTTCCGCAGCCACGGTGACGGCGGGCTGGGCGTGGTGG ACATGAACCGCTCGATCGTCAAGTCGAGCAACGTCTACTACTACCAGCTGGCCGCCGACATGGGCGTGGACCTGATCCAC GAGCAGCTCGAGCCCTTCGGCTTCGGCCGCCGCACCGGCATCGACATCAACGGCGAGGTCACCGGCGTGCTGCCCTCGAC CGAGTGGAAGCGCAAGTACTACAAGAAGCCGGAGCTGCAGAAGTGGTACGCCGGCGAGACCATCTCGCTCGGCATCGGCC AGGGCTACAACAACTTCACGATGCTGCAGCTCGCCACCGCCACCGCCACGCTGGTATCGGGCGGGCAGCGCTATGTGCCG CGGCTGGTGCGCGAGATCGAGGATGTGGCAACCCGGGAGACCCGACTGATGTCGGCCGAGGCGCTGAGTCCGCTGCCGTT GCAGCCCGATCACGTGGAGGTGGTCCGCAAGGCGCTGCACGGCGTGACGCAGGAAGGCACCTCGACGCGCGTCTTCATGG GGGCGAGCTACCCGAGTGGTGGGAAGACCGGGACGGCGCAGGCGGTCGGCATTCGCCAGGACCAGAAGTACGACAAGAGC AAGATGGCCGACTACCTGCGCGACCATTCGCTCTACACCGCCTTCGCGCCGGTCGACAACCCGCAGGTCGCACTGGCCGT CATCGTGGAGAACTCCGGTTTCGGCGCCGAGGCGGCCGCGCCGATCGCGCGGCGCGTGCTCGATTTCGTGCTGACGGGGC GCTACCCGAACGCCGAGGACATCGCGCTGGTCCAGAAGGGCCAAGCCGGTCCGCCGGTCGGCACGCCGCGACTCGCCGCC GAGGTGCCGCTGATGCCGTTCACGCCCGGCGCCGTCACGACCGCCGGCGGTGAGGCCGCCGCGGCGCCTGCCGCCCCCGC CTCCCAACCCGCCCCGGCGGCTTCGGCGCCCGGGGGAGCGGCGGCAGCCCCGCCGGCGAAGATCGCCCAGGCGCCGGCGC CGACAGCACCGGCCGAGGCCACGAATCGATGA
Upstream 100 bases:
>100_bases CCGGTGGCCGCCGTGCTGCTGCTGGCGCCGCAGCGCCGTGCGCCGGACCGGGACGAGAATCGACCGCTGTGACCGCAGCG CGGCAACGCCGGACAGGACC
Downstream 100 bases:
>100_bases GCACCGTGTTCGACAAGCGTCCGTGGTGGCAACGTGCCGCCACCGTGTTCATGGGCTTCGACGGACCGCTGGCGCTGGCC ATCGTGCTGCTGGCGGCCGC
Product: peptidoglycan glycosyltransferase
Products: NA
Alternate protein names: PBP-2 [H]
Number of amino acids: Translated: 703; Mature: 702
Protein sequence:
>703_residues MTELKNVDQELGRFRLRLIAAGALVLFGFGLVTARLVTLQVLRHDELSTRAESNRITVLPITPNRGLILDRNGVVLANNY SAYTLELTPSKIDDLEGTIDALQEVIDITTRDRRRFKRMMDDAKSFESLPIRTKLSDEEVARFTAQRFRFPGVDIKARLF RNYPYGELGSHVLGYIGRINQAEKDAIDETDDAANYKGTDYIGKLGIEQKYEAELHGITGFEEVETSASGRAVRRLRASP PTPGNTVRLSIDIKLQAMVEQLFGDRRGALVAIDPRSGEVLAFVSKPTFDPNLFVDGIDSESWKELNESIDKPLLNRALR GTYPPGSTFKPFMAIAALESGKRTPQQTTYDNGVFMFGNHRFRSHGDGGLGVVDMNRSIVKSSNVYYYQLAADMGVDLIH EQLEPFGFGRRTGIDINGEVTGVLPSTEWKRKYYKKPELQKWYAGETISLGIGQGYNNFTMLQLATATATLVSGGQRYVP RLVREIEDVATRETRLMSAEALSPLPLQPDHVEVVRKALHGVTQEGTSTRVFMGASYPSGGKTGTAQAVGIRQDQKYDKS KMADYLRDHSLYTAFAPVDNPQVALAVIVENSGFGAEAAAPIARRVLDFVLTGRYPNAEDIALVQKGQAGPPVGTPRLAA EVPLMPFTPGAVTTAGGEAAAAPAAPASQPAPAASAPGGAAAAPPAKIAQAPAPTAPAEATNR
Sequences:
>Translated_703_residues MTELKNVDQELGRFRLRLIAAGALVLFGFGLVTARLVTLQVLRHDELSTRAESNRITVLPITPNRGLILDRNGVVLANNY SAYTLELTPSKIDDLEGTIDALQEVIDITTRDRRRFKRMMDDAKSFESLPIRTKLSDEEVARFTAQRFRFPGVDIKARLF RNYPYGELGSHVLGYIGRINQAEKDAIDETDDAANYKGTDYIGKLGIEQKYEAELHGITGFEEVETSASGRAVRRLRASP PTPGNTVRLSIDIKLQAMVEQLFGDRRGALVAIDPRSGEVLAFVSKPTFDPNLFVDGIDSESWKELNESIDKPLLNRALR GTYPPGSTFKPFMAIAALESGKRTPQQTTYDNGVFMFGNHRFRSHGDGGLGVVDMNRSIVKSSNVYYYQLAADMGVDLIH EQLEPFGFGRRTGIDINGEVTGVLPSTEWKRKYYKKPELQKWYAGETISLGIGQGYNNFTMLQLATATATLVSGGQRYVP RLVREIEDVATRETRLMSAEALSPLPLQPDHVEVVRKALHGVTQEGTSTRVFMGASYPSGGKTGTAQAVGIRQDQKYDKS KMADYLRDHSLYTAFAPVDNPQVALAVIVENSGFGAEAAAPIARRVLDFVLTGRYPNAEDIALVQKGQAGPPVGTPRLAA EVPLMPFTPGAVTTAGGEAAAAPAAPASQPAPAASAPGGAAAAPPAKIAQAPAPTAPAEATNR >Mature_702_residues TELKNVDQELGRFRLRLIAAGALVLFGFGLVTARLVTLQVLRHDELSTRAESNRITVLPITPNRGLILDRNGVVLANNYS AYTLELTPSKIDDLEGTIDALQEVIDITTRDRRRFKRMMDDAKSFESLPIRTKLSDEEVARFTAQRFRFPGVDIKARLFR NYPYGELGSHVLGYIGRINQAEKDAIDETDDAANYKGTDYIGKLGIEQKYEAELHGITGFEEVETSASGRAVRRLRASPP TPGNTVRLSIDIKLQAMVEQLFGDRRGALVAIDPRSGEVLAFVSKPTFDPNLFVDGIDSESWKELNESIDKPLLNRALRG TYPPGSTFKPFMAIAALESGKRTPQQTTYDNGVFMFGNHRFRSHGDGGLGVVDMNRSIVKSSNVYYYQLAADMGVDLIHE QLEPFGFGRRTGIDINGEVTGVLPSTEWKRKYYKKPELQKWYAGETISLGIGQGYNNFTMLQLATATATLVSGGQRYVPR LVREIEDVATRETRLMSAEALSPLPLQPDHVEVVRKALHGVTQEGTSTRVFMGASYPSGGKTGTAQAVGIRQDQKYDKSK MADYLRDHSLYTAFAPVDNPQVALAVIVENSGFGAEAAAPIARRVLDFVLTGRYPNAEDIALVQKGQAGPPVGTPRLAAE VPLMPFTPGAVTTAGGEAAAAPAAPASQPAPAASAPGGAAAAPPAKIAQAPAPTAPAEATNR
Specific function: Cell wall formation; PBP-2 is responsible for the determination of the rod shape of the cell. Its synthesize cross- linked peptidoglycan from the lipid intermediates [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell inner membrane [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786854, Length=615, Percent_Identity=40, Blast_Score=481, Evalue=1e-137, Organism=Escherichia coli, GI1786272, Length=644, Percent_Identity=23.6024844720497, Blast_Score=119, Evalue=5e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR005311 - InterPro: IPR001460 - InterPro: IPR017790 [H]
Pfam domain/function: PF03717 PBP_dimer; PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 76396; Mature: 76265
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTELKNVDQELGRFRLRLIAAGALVLFGFGLVTARLVTLQVLRHDELSTRAESNRITVLP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEE ITPNRGLILDRNGVVLANNYSAYTLELTPSKIDDLEGTIDALQEVIDITTRDRRRFKRMM ECCCCCEEEECCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DDAKSFESLPIRTKLSDEEVARFTAQRFRFPGVDIKARLFRNYPYGELGSHVLGYIGRIN HHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCC QAEKDAIDETDDAANYKGTDYIGKLGIEQKYEAELHGITGFEEVETSASGRAVRRLRASP CHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCCCHHHHHCCCCCHHHHHHHCCC PTPGNTVRLSIDIKLQAMVEQLFGDRRGALVAIDPRSGEVLAFVSKPTFDPNLFVDGIDS CCCCCEEEEEEEEEHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCCCCCCCEEECCCC ESWKELNESIDKPLLNRALRGTYPPGSTFKPFMAIAALESGKRTPQQTTYDNGVFMFGNH HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCC RFRSHGDGGLGVVDMNRSIVKSSNVYYYQLAADMGVDLIHEQLEPFGFGRRTGIDINGEV EECCCCCCCEEEEECCHHHHHCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEE TGVLPSTEWKRKYYKKPELQKWYAGETISLGIGQGYNNFTMLQLATATATLVSGGQRYVP EEECCCCHHHHHHCCCCCHHHHHCCCEEEEECCCCCCCEEEEEEHHHHHHHHCCCHHHHH RLVREIEDVATRETRLMSAEALSPLPLQPDHVEVVRKALHGVTQEGTSTRVFMGASYPSG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCC GKTGTAQAVGIRQDQKYDKSKMADYLRDHSLYTAFAPVDNPQVALAVIVENSGFGAEAAA CCCCCEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHH PIARRVLDFVLTGRYPNAEDIALVQKGQAGPPVGTPRLAAEVPLMPFTPGAVTTAGGEAA HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCC AAPAAPASQPAPAASAPGGAAAAPPAKIAQAPAPTAPAEATNR CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC >Mature Secondary Structure TELKNVDQELGRFRLRLIAAGALVLFGFGLVTARLVTLQVLRHDELSTRAESNRITVLP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEE ITPNRGLILDRNGVVLANNYSAYTLELTPSKIDDLEGTIDALQEVIDITTRDRRRFKRMM ECCCCCEEEECCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DDAKSFESLPIRTKLSDEEVARFTAQRFRFPGVDIKARLFRNYPYGELGSHVLGYIGRIN HHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHCC QAEKDAIDETDDAANYKGTDYIGKLGIEQKYEAELHGITGFEEVETSASGRAVRRLRASP CHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHCCCCCHHHHHCCCCCHHHHHHHCCC PTPGNTVRLSIDIKLQAMVEQLFGDRRGALVAIDPRSGEVLAFVSKPTFDPNLFVDGIDS CCCCCEEEEEEEEEHHHHHHHHHCCCCCCEEEECCCCCCEEEEEECCCCCCCCEEECCCC ESWKELNESIDKPLLNRALRGTYPPGSTFKPFMAIAALESGKRTPQQTTYDNGVFMFGNH HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCC RFRSHGDGGLGVVDMNRSIVKSSNVYYYQLAADMGVDLIHEQLEPFGFGRRTGIDINGEV EECCCCCCCEEEEECCHHHHHCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCEE TGVLPSTEWKRKYYKKPELQKWYAGETISLGIGQGYNNFTMLQLATATATLVSGGQRYVP EEECCCCHHHHHHCCCCCHHHHHCCCEEEEECCCCCCCEEEEEEHHHHHHHHCCCHHHHH RLVREIEDVATRETRLMSAEALSPLPLQPDHVEVVRKALHGVTQEGTSTRVFMGASYPSG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCC GKTGTAQAVGIRQDQKYDKSKMADYLRDHSLYTAFAPVDNPQVALAVIVENSGFGAEAAA CCCCCEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECCCCCCHHHH PIARRVLDFVLTGRYPNAEDIALVQKGQAGPPVGTPRLAAEVPLMPFTPGAVTTAGGEAA HHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCEEECCCCCC AAPAAPASQPAPAASAPGGAAAAPPAKIAQAPAPTAPAEATNR CCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]