Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is yvlD [H]

Identifier: 124265252

GI number: 124265252

Start: 54678

End: 55028

Strand: Direct

Name: yvlD [H]

Synonym: Mpe_A0059

Alternate gene names: 124265252

Gene position: 54678-55028 (Clockwise)

Preceding gene: 124265251

Following gene: 124265255

Centisome position: 1.35

GC content: 67.24

Gene sequence:

>351_bases
ATGAAGATCCTCGTCCGATGGCTGCTGCTGGCGGCCGCGCTGCTGCTGGTGGCCCATCTCTACCCGGGCGTCGTGGTGCA
GAGCTTCGGTGCCGCGATGATCGCGGCGCTGGTGCTCGGCCTGTTCAACGCCGTGCTGCGCCCGCTGCTGGTGCTGCTGA
CCCTGCCGGTCACGCTGCTGACGCTGGGCCTGTTCCTGTTCGTCATCAACGCGCTGATGTTCTATTTCGCCGCCAGCGTG
CTCGACGGCTTCAGCGTGCGCGGCTTCGGCGCTGCCCTGATCGGCTCGCTGATCTACAGCGTGTGCGGGCTCGTGATCGA
CGCGGCGATGGAGCGGCTGTTCAGCCGCTGA

Upstream 100 bases:

>100_bases
CTCGAACGCCACGCGCGGCAACATCGAAGTGCGGCTGAGCGTGGTCTGACGCGGGCAGCATCCGCGCAGGATCCGCGGCT
CGCCGTGTATCCTGCGCGCC

Downstream 100 bases:

>100_bases
GGTGCCGGTGGGTCGTGCCGTCGCTCCGACGCGCCGACCTCAAAGCTCGCCGCGCTCCTCGGCAATGATCTGCCGGCGCT
GCAGCTCCAGCTCGCGCAGC

Product: putative transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MKILVRWLLLAAALLLVAHLYPGVVVQSFGAAMIAALVLGLFNAVLRPLLVLLTLPVTLLTLGLFLFVINALMFYFAASV
LDGFSVRGFGAALIGSLIYSVCGLVIDAAMERLFSR

Sequences:

>Translated_116_residues
MKILVRWLLLAAALLLVAHLYPGVVVQSFGAAMIAALVLGLFNAVLRPLLVLLTLPVTLLTLGLFLFVINALMFYFAASV
LDGFSVRGFGAALIGSLIYSVCGLVIDAAMERLFSR
>Mature_116_residues
MKILVRWLLLAAALLLVAHLYPGVVVQSFGAAMIAALVLGLFNAVLRPLLVLLTLPVTLLTLGLFLFVINALMFYFAASV
LDGFSVRGFGAALIGSLIYSVCGLVIDAAMERLFSR

Specific function: Unknown

COG id: COG1950

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007165 [H]

Pfam domain/function: PF04020 DUF360 [H]

EC number: NA

Molecular weight: Translated: 12412; Mature: 12412

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILVRWLLLAAALLLVAHLYPGVVVQSFGAAMIAALVLGLFNAVLRPLLVLLTLPVTLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGLFLFVINALMFYFAASVLDGFSVRGFGAALIGSLIYSVCGLVIDAAMERLFSR
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKILVRWLLLAAALLLVAHLYPGVVVQSFGAAMIAALVLGLFNAVLRPLLVLLTLPVTLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGLFLFVINALMFYFAASVLDGFSVRGFGAALIGSLIYSVCGLVIDAAMERLFSR
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]