| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is yvlD [H]
Identifier: 124265252
GI number: 124265252
Start: 54678
End: 55028
Strand: Direct
Name: yvlD [H]
Synonym: Mpe_A0059
Alternate gene names: 124265252
Gene position: 54678-55028 (Clockwise)
Preceding gene: 124265251
Following gene: 124265255
Centisome position: 1.35
GC content: 67.24
Gene sequence:
>351_bases ATGAAGATCCTCGTCCGATGGCTGCTGCTGGCGGCCGCGCTGCTGCTGGTGGCCCATCTCTACCCGGGCGTCGTGGTGCA GAGCTTCGGTGCCGCGATGATCGCGGCGCTGGTGCTCGGCCTGTTCAACGCCGTGCTGCGCCCGCTGCTGGTGCTGCTGA CCCTGCCGGTCACGCTGCTGACGCTGGGCCTGTTCCTGTTCGTCATCAACGCGCTGATGTTCTATTTCGCCGCCAGCGTG CTCGACGGCTTCAGCGTGCGCGGCTTCGGCGCTGCCCTGATCGGCTCGCTGATCTACAGCGTGTGCGGGCTCGTGATCGA CGCGGCGATGGAGCGGCTGTTCAGCCGCTGA
Upstream 100 bases:
>100_bases CTCGAACGCCACGCGCGGCAACATCGAAGTGCGGCTGAGCGTGGTCTGACGCGGGCAGCATCCGCGCAGGATCCGCGGCT CGCCGTGTATCCTGCGCGCC
Downstream 100 bases:
>100_bases GGTGCCGGTGGGTCGTGCCGTCGCTCCGACGCGCCGACCTCAAAGCTCGCCGCGCTCCTCGGCAATGATCTGCCGGCGCT GCAGCTCCAGCTCGCGCAGC
Product: putative transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 116; Mature: 116
Protein sequence:
>116_residues MKILVRWLLLAAALLLVAHLYPGVVVQSFGAAMIAALVLGLFNAVLRPLLVLLTLPVTLLTLGLFLFVINALMFYFAASV LDGFSVRGFGAALIGSLIYSVCGLVIDAAMERLFSR
Sequences:
>Translated_116_residues MKILVRWLLLAAALLLVAHLYPGVVVQSFGAAMIAALVLGLFNAVLRPLLVLLTLPVTLLTLGLFLFVINALMFYFAASV LDGFSVRGFGAALIGSLIYSVCGLVIDAAMERLFSR >Mature_116_residues MKILVRWLLLAAALLLVAHLYPGVVVQSFGAAMIAALVLGLFNAVLRPLLVLLTLPVTLLTLGLFLFVINALMFYFAASV LDGFSVRGFGAALIGSLIYSVCGLVIDAAMERLFSR
Specific function: Unknown
COG id: COG1950
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007165 [H]
Pfam domain/function: PF04020 DUF360 [H]
EC number: NA
Molecular weight: Translated: 12412; Mature: 12412
Theoretical pI: Translated: 9.80; Mature: 9.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILVRWLLLAAALLLVAHLYPGVVVQSFGAAMIAALVLGLFNAVLRPLLVLLTLPVTLL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLGLFLFVINALMFYFAASVLDGFSVRGFGAALIGSLIYSVCGLVIDAAMERLFSR HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKILVRWLLLAAALLLVAHLYPGVVVQSFGAAMIAALVLGLFNAVLRPLLVLLTLPVTLL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TLGLFLFVINALMFYFAASVLDGFSVRGFGAALIGSLIYSVCGLVIDAAMERLFSR HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]