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The map label for this gene is xerD [C]

Identifier: 124028392

GI number: 124028392

Start: 1557108

End: 1558328

Strand: Reverse

Name: xerD [C]

Synonym: Hbut_1546

Alternate gene names: 124028392

Gene position: 1558328-1557108 (Counterclockwise)

Preceding gene: 124028393

Following gene: 124028389

Centisome position: 93.47

GC content: 58.56

Gene sequence:

>1221_bases
TTGACGAAATTCGACCTGCCACCGCCGCCGCCCGGAATAGAATCGAAGAGCAACGAGGAGATAGTTGAGGCTTTCCTTGC
AGCCCTAGCCGCAGCTGGTGCAAGCCCAAAGACTGTGAAGGCCTACCGTGCAGCACTACGCGACTTCCTAGACTTCATAG
GCGACAAACACATCTTCCAGATAGACAGCAGCGATGTCTCCGCATGGATATACGAGAGGCTCTCCAAGGGTGTGCGAAGG
CCAAGGAGCAGCGGCAATAATCTCCTCGACGCCCGCAGCCGCCAGGCAACAATGCACTACTACACATTGTTCCTCCGGGG
CTTCCTAGCATGGCTAGGCCTAGATGTAAAGGTGCCGGTGGTAAAGAAGCCCCGCGGCGCACGCGTCGAAGCCCTGAGTA
GGGAGGAGGTTGAGAAGCTACTCGCGGCAGCCCGGGACCCCCTAGACCTCCTCATAGTCGCGCTTCTCTTTGAGACAGGG
CTACGAGCCCAGGAAGCTGTAGAACTCAGGCTCGGCGATATAGACTTCCAGCGCCGCGAGATAAGAGTAAGAGGCGCCAA
GTACGGGGAGGAGAGGATAGTCCTCTATGGCCCGTTGACTGAGTATGCGATGCAGATCTGGCTCCAGCTGCATCCAGACA
TGAAGCCAGACGATAAGCTGCTTGGGATAAGCTATAGTGGGCTCTATAAGAGGCTAAAGACGCTGGCGAAGCGGGCAGGT
CTCGATCCGAGAAAGGTTAGGCCCCACGTGCTACGCCATACATTCGCAACAGAGGCTCTACGTAGGGGTCTACCACTGCC
TGCGGTGCAGAGGCTCCTCGGCCATAAGGACATCAAGGTTACCCAGGTGTACCTACACCTCGTAAACGAGGATATACGCC
GCCTATACCAGCAAGCGTTCTCTCAGCCCATGGCACCACCGGCAGCCCAGCCGTACCTGCAGCAGGCCGTGGTTCCGCCA
GTCCAGCCGCCGCAGCTCCCCATGGCGCAACAGTTGCCAGCCCAGCAGGCCCAACCAATGCTGCAGCCAGCACCATACCC
CGTCATGGCGTCTCCTCAGCCGCCTATCCAGCAGATCCAAACACCCTACATGCAGCTAGCGGCACAGCGACCCCTTACTC
AGCAGTCAGTCTCCATGTACGCTGGATGGCAGCAGTCTCAGCCGTTAGCCAGCCAGGCAGCTCCATCCATGACTAGGAAA
GAGGCGGGTGTTGAGGCCTAG

Upstream 100 bases:

>100_bases
GAATCCATGCTAGGCTCCGGGAGGGTAACACCCCGCTATACACGGAGCCGCAGCCCCAAGCCCCAGCAAGGGCCTGGAAT
ACCTAGGATAGGGACGCTGC

Downstream 100 bases:

>100_bases
CCAAGGCCTAGCTCCTCCTTGGAGACCACCGTGGCAGAGCCGTAGCCCACTAGTATGATCTTGTCTGGCGCTAGTGCTTC
GAGCACCTCGGGACGGTTAG

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MTKFDLPPPPPGIESKSNEEIVEAFLAALAAAGASPKTVKAYRAALRDFLDFIGDKHIFQIDSSDVSAWIYERLSKGVRR
PRSSGNNLLDARSRQATMHYYTLFLRGFLAWLGLDVKVPVVKKPRGARVEALSREEVEKLLAAARDPLDLLIVALLFETG
LRAQEAVELRLGDIDFQRREIRVRGAKYGEERIVLYGPLTEYAMQIWLQLHPDMKPDDKLLGISYSGLYKRLKTLAKRAG
LDPRKVRPHVLRHTFATEALRRGLPLPAVQRLLGHKDIKVTQVYLHLVNEDIRRLYQQAFSQPMAPPAAQPYLQQAVVPP
VQPPQLPMAQQLPAQQAQPMLQPAPYPVMASPQPPIQQIQTPYMQLAAQRPLTQQSVSMYAGWQQSQPLASQAAPSMTRK
EAGVEA

Sequences:

>Translated_406_residues
MTKFDLPPPPPGIESKSNEEIVEAFLAALAAAGASPKTVKAYRAALRDFLDFIGDKHIFQIDSSDVSAWIYERLSKGVRR
PRSSGNNLLDARSRQATMHYYTLFLRGFLAWLGLDVKVPVVKKPRGARVEALSREEVEKLLAAARDPLDLLIVALLFETG
LRAQEAVELRLGDIDFQRREIRVRGAKYGEERIVLYGPLTEYAMQIWLQLHPDMKPDDKLLGISYSGLYKRLKTLAKRAG
LDPRKVRPHVLRHTFATEALRRGLPLPAVQRLLGHKDIKVTQVYLHLVNEDIRRLYQQAFSQPMAPPAAQPYLQQAVVPP
VQPPQLPMAQQLPAQQAQPMLQPAPYPVMASPQPPIQQIQTPYMQLAAQRPLTQQSVSMYAGWQQSQPLASQAAPSMTRK
EAGVEA
>Mature_405_residues
TKFDLPPPPPGIESKSNEEIVEAFLAALAAAGASPKTVKAYRAALRDFLDFIGDKHIFQIDSSDVSAWIYERLSKGVRRP
RSSGNNLLDARSRQATMHYYTLFLRGFLAWLGLDVKVPVVKKPRGARVEALSREEVEKLLAAARDPLDLLIVALLFETGL
RAQEAVELRLGDIDFQRREIRVRGAKYGEERIVLYGPLTEYAMQIWLQLHPDMKPDDKLLGISYSGLYKRLKTLAKRAGL
DPRKVRPHVLRHTFATEALRRGLPLPAVQRLLGHKDIKVTQVYLHLVNEDIRRLYQQAFSQPMAPPAAQPYLQQAVVPPV
QPPQLPMAQQLPAQQAQPMLQPAPYPVMASPQPPIQQIQTPYMQLAAQRPLTQQSVSMYAGWQQSQPLASQAAPSMTRKE
AGVEA

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=303, Percent_Identity=33.003300330033, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790244, Length=216, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45535; Mature: 45404

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKFDLPPPPPGIESKSNEEIVEAFLAALAAAGASPKTVKAYRAALRDFLDFIGDKHIFQ
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
IDSSDVSAWIYERLSKGVRRPRSSGNNLLDARSRQATMHYYTLFLRGFLAWLGLDVKVPV
ECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VKKPRGARVEALSREEVEKLLAAARDPLDLLIVALLFETGLRAQEAVELRLGDIDFQRRE
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHH
IRVRGAKYGEERIVLYGPLTEYAMQIWLQLHPDMKPDDKLLGISYSGLYKRLKTLAKRAG
HEECCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHCC
LDPRKVRPHVLRHTFATEALRRGLPLPAVQRLLGHKDIKVTQVYLHLVNEDIRRLYQQAF
CCHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
SQPMAPPAAQPYLQQAVVPPVQPPQLPMAQQLPAQQAQPMLQPAPYPVMASPQPPIQQIQ
CCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCHHHHH
TPYMQLAAQRPLTQQSVSMYAGWQQSQPLASQAAPSMTRKEAGVEA
HHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHCCHHHHHHCCCCC
>Mature Secondary Structure 
TKFDLPPPPPGIESKSNEEIVEAFLAALAAAGASPKTVKAYRAALRDFLDFIGDKHIFQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
IDSSDVSAWIYERLSKGVRRPRSSGNNLLDARSRQATMHYYTLFLRGFLAWLGLDVKVPV
ECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
VKKPRGARVEALSREEVEKLLAAARDPLDLLIVALLFETGLRAQEAVELRLGDIDFQRRE
CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHH
IRVRGAKYGEERIVLYGPLTEYAMQIWLQLHPDMKPDDKLLGISYSGLYKRLKTLAKRAG
HEECCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHCC
LDPRKVRPHVLRHTFATEALRRGLPLPAVQRLLGHKDIKVTQVYLHLVNEDIRRLYQQAF
CCHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
SQPMAPPAAQPYLQQAVVPPVQPPQLPMAQQLPAQQAQPMLQPAPYPVMASPQPPIQQIQ
CCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCHHHHH
TPYMQLAAQRPLTQQSVSMYAGWQQSQPLASQAAPSMTRKEAGVEA
HHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]