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The map label for this gene is rpl18p

Identifier: 124028174

GI number: 124028174

Start: 1317805

End: 1318440

Strand: Direct

Name: rpl18p

Synonym: Hbut_1319

Alternate gene names: 124028174

Gene position: 1317805-1318440 (Clockwise)

Preceding gene: 124028173

Following gene: 124028175

Centisome position: 79.04

GC content: 56.76

Gene sequence:

>636_bases
ATGGCGCATGGCCCTCGCTACAAGGTGCCCAGGCGTAGGCGGAGGGAGGGTAAGACAAACTACTACAAGCGCTACGTAAT
GGTTCTCTCGGGTAAGCCCAGGTTCGTTGTCAGGAGGACTAACCAGTACATCTGGGTACAAGTGATAATAGCTAAGCCCC
AGGGTGACGTCACGGTGGCAGCTGCTCATAGCAGGGAGCTGGTAAAGAAGTATGGCTGGCTGGGTGGCACCAAGAACACT
CCTGCTGCCTACCTGACTGGGCTCCTAGCAGCGCTTCGTGCACTCAAGGCCGGCATAACCTACGCAGTTCTCGACATTGG
CCTGCACAGGCCGACGCGTGGTGCTCGCGTCTTCGCAGCTCTCAAGGGCGCCCTGGATGCTGGCCTGGAGATACCTCACA
GCGAGGAGGTGCTCCCCGAGGAGTACCGTATACGTGGCGAGCACATAGCAAAGTATGCTGCAATGCTGAAGGAGCAGAAC
CCGGAGCTCTACGAGAAACGGTTTAGCCTATACCTCGCCCGTGGCTTAAACCCTGAGGACCTGCCGCAGCACTTTGAGGA
GGTTAAGAATAAAATCCTAGAGGAGTACCGTGAGGTTCTTGAGAAGGTTAAGGCAGAAGCTGCTGTGGAGGCGTGA

Upstream 100 bases:

>100_bases
TGGCTCGCCGAGGTCCCTCCCCTACTCAGCTTATTAGGGGTGGGGGCCTCGGTTCCACGGCTCTGGGTGCTAGGCTAGAG
GGGCACTGTGGTGGAGCATT

Downstream 100 bases:

>100_bases
TAGCGATGAGCCTCTCGCCCTATGAGCTGGAGCAGGAATGGCAGCCGAGAACCTACGTTGGCAGGCTAGTGAAGGAGGGG
CGTATACGCAGCCTCTCAGA

Product: 50S ribosomal protein L18P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MAHGPRYKVPRRRRREGKTNYYKRYVMVLSGKPRFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNT
PAAYLTGLLAALRALKAGITYAVLDIGLHRPTRGARVFAALKGALDAGLEIPHSEEVLPEEYRIRGEHIAKYAAMLKEQN
PELYEKRFSLYLARGLNPEDLPQHFEEVKNKILEEYREVLEKVKAEAAVEA

Sequences:

>Translated_211_residues
MAHGPRYKVPRRRRREGKTNYYKRYVMVLSGKPRFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNT
PAAYLTGLLAALRALKAGITYAVLDIGLHRPTRGARVFAALKGALDAGLEIPHSEEVLPEEYRIRGEHIAKYAAMLKEQN
PELYEKRFSLYLARGLNPEDLPQHFEEVKNKILEEYREVLEKVKAEAAVEA
>Mature_210_residues
AHGPRYKVPRRRRREGKTNYYKRYVMVLSGKPRFVVRRTNQYIWVQVIIAKPQGDVTVAAAHSRELVKKYGWLGGTKNTP
AAYLTGLLAALRALKAGITYAVLDIGLHRPTRGARVFAALKGALDAGLEIPHSEEVLPEEYRIRGEHIAKYAAMLKEQNP
ELYEKRFSLYLARGLNPEDLPQHFEEVKNKILEEYREVLEKVKAEAAVEA

Specific function: This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance

COG id: COG0256

COG function: function code J; Ribosomal protein L18

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18P family

Homologues:

Organism=Homo sapiens, GI14591909, Length=240, Percent_Identity=36.25, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17534333, Length=237, Percent_Identity=38.3966244725738, Blast_Score=137, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6325126, Length=227, Percent_Identity=39.647577092511, Blast_Score=127, Evalue=1e-30,
Organism=Drosophila melanogaster, GI116007384, Length=237, Percent_Identity=36.7088607594937, Blast_Score=130, Evalue=7e-31,
Organism=Drosophila melanogaster, GI116007382, Length=237, Percent_Identity=36.7088607594937, Blast_Score=130, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL18_HYPBU (A2BMD8)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013494.1
- ProteinModelPortal:   A2BMD8
- SMR:   A2BMD8
- STRING:   A2BMD8
- GeneID:   4781623
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1319
- eggNOG:   arNOG08828
- HOGENOM:   HBG391676
- OMA:   GNTPSAY
- PhylomeDB:   A2BMD8
- ProtClustDB:   PRK08569
- BioCyc:   HBUT415426:HBUT_1319-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01337_A
- InterPro:   IPR005484
- InterPro:   IPR005485
- PANTHER:   PTHR23410

Pfam domain/function: PF00861 Ribosomal_L18p

EC number: NA

Molecular weight: Translated: 24039; Mature: 23908

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHGPRYKVPRRRRREGKTNYYKRYVMVLSGKPRFVVRRTNQYIWVQVIIAKPQGDVTVA
CCCCCCCCCCHHHHHCCCHHHHHHEEEEECCCCCEEEEECCCEEEEEEEEECCCCCEEEE
AAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALKAGITYAVLDIGLHRPTRGARVFAA
EHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHH
LKGALDAGLEIPHSEEVLPEEYRIRGEHIAKYAAMLKEQNPELYEKRFSLYLARGLNPED
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHH
LPQHFEEVKNKILEEYREVLEKVKAEAAVEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AHGPRYKVPRRRRREGKTNYYKRYVMVLSGKPRFVVRRTNQYIWVQVIIAKPQGDVTVA
CCCCCCCCCHHHHHCCCHHHHHHEEEEECCCCCEEEEECCCEEEEEEEEECCCCCEEEE
AAHSRELVKKYGWLGGTKNTPAAYLTGLLAALRALKAGITYAVLDIGLHRPTRGARVFAA
EHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHH
LKGALDAGLEIPHSEEVLPEEYRIRGEHIAKYAAMLKEQNPELYEKRFSLYLARGLNPED
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHH
LPQHFEEVKNKILEEYREVLEKVKAEAAVEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA