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The map label for this gene is rps4e

Identifier: 124028167

GI number: 124028167

Start: 1314081

End: 1314848

Strand: Direct

Name: rps4e

Synonym: Hbut_1312

Alternate gene names: 124028167

Gene position: 1314081-1314848 (Clockwise)

Preceding gene: 124028166

Following gene: 124028168

Centisome position: 78.82

GC content: 55.47

Gene sequence:

>768_bases
ATGGCGCGAATGGGTGGTAGGAGGCACCTAAAGACGCTGGCTGCGCCAAAGTTCTGGCCTGTAAGGCAGCGTGCTGGCAT
ATTTACGGTTAAGCCGTCGCCGGGGCCCCACCCGATAGAGCGGTCGATACCTCTACTCATACTGGTCCGCGATGTGCTGG
GCTACGCTAAGACTGCTAGAGAGGCAAGGAAGCTAATAGCAGAGGGCCACTTCAAGATCGACGGGAGGGTTAGGAGGAAC
TACAAGTACCCAGTCGGCTTCATGGATGTGATAGAGATAGTTGACACTGGTGAGTTCTACCGCGTCCTACCATATCCAAC
AAGGTTCTTCACCCTACACCCGATATCGAAGGAGGAGGCGCAGTTCAAGCTGGGTAGGATAGAGGACAAGAGCACGGTCA
AGGGTGGCCACATCCAGCTACACCTACACGATGGCCGAAACGTGCTCATTAGGGTATCTGACCCGACAAACCCCGTGGAG
GCCAAGCCGTACAAGACGCTAGGCACAGTCAAGATCTCCATACCAGAACAGCAACTCCTAGGCTACGCTCCGCTCGAGGT
TGGTAGCCTAGTGATAATCTTTGGCGGTCGCAACGTTGGCCGTGTAGGCCGCATAGTCTCGATACAGCCTGGCATGAGGC
GCCGCGGAATAGTAACAATAGAGGATGCAAGGGGCGAGAAGATACAGACAAGCCTTGAGTACGTATTCGTCATAGCTCCG
CCCAACGAGGAGCCCTGGATAAGCCTACCGGAGGGTGCGTGGAAGTGA

Upstream 100 bases:

>100_bases
CTACAGCTAGCACTAATGAAGGCAGCGGCGGGGGGCTCAGCTGAAGCTATAGGGGAGGAGGGGAAGGCTAGCTAAGCACC
GGGTTTGAGGTGGTAAGGTT

Downstream 100 bases:

>100_bases
CGGCGGCAGTTACCACGCAGGCACGCATACCCCTCACTCCGGAGCAGATAGAGGAGATACACCGCAAGTGGGATAGCAAT
CCAATGCTAAAGCCAAGGAT

Product: 30S ribosomal protein S4e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRN
YKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVE
AKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAP
PNEEPWISLPEGAWK

Sequences:

>Translated_255_residues
MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRN
YKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVE
AKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAP
PNEEPWISLPEGAWK
>Mature_254_residues
ARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNY
KYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEA
KPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPP
NEEPWISLPEGAWK

Specific function: Unknown

COG id: COG1471

COG function: function code J; Ribosomal protein S4E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain

Homologues:

Organism=Homo sapiens, GI4506727, Length=252, Percent_Identity=37.6984126984127, Blast_Score=165, Evalue=4e-41,
Organism=Homo sapiens, GI4506725, Length=252, Percent_Identity=37.3015873015873, Blast_Score=162, Evalue=3e-40,
Organism=Homo sapiens, GI88703062, Length=252, Percent_Identity=36.1111111111111, Blast_Score=161, Evalue=7e-40,
Organism=Caenorhabditis elegans, GI17543386, Length=254, Percent_Identity=37.7952755905512, Blast_Score=157, Evalue=7e-39,
Organism=Saccharomyces cerevisiae, GI6322605, Length=252, Percent_Identity=37.6984126984127, Blast_Score=160, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6321997, Length=252, Percent_Identity=37.6984126984127, Blast_Score=160, Evalue=1e-40,
Organism=Drosophila melanogaster, GI24663672, Length=252, Percent_Identity=39.6825396825397, Blast_Score=166, Evalue=1e-41,
Organism=Drosophila melanogaster, GI24663668, Length=252, Percent_Identity=39.6825396825397, Blast_Score=166, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS4E_HYPBU (A2BMD1)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013487.1
- ProteinModelPortal:   A2BMD1
- STRING:   A2BMD1
- GeneID:   4782923
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1312
- eggNOG:   arNOG06304
- HOGENOM:   HBG392118
- OMA:   QLNLHDG
- PhylomeDB:   A2BMD1
- ProtClustDB:   PRK04313
- BioCyc:   HBUT415426:HBUT_1312-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00485
- InterPro:   IPR005824
- InterPro:   IPR000876
- InterPro:   IPR022994
- InterPro:   IPR013845
- InterPro:   IPR013843
- InterPro:   IPR002942
- PANTHER:   PTHR11581
- PIRSF:   PIRSF002116
- ProDom:   PD002667
- SMART:   SM00739
- SMART:   SM00363

Pfam domain/function: PF00900 Ribosomal_S4e; PF08071 RS4NT; PF01479 S4

EC number: NA

Molecular weight: Translated: 28756; Mature: 28625

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: PS00528 RIBOSOMAL_S4E; PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAR
CCCCCCHHHHHHHCCCCCCCCHHCCCEEEECCCCCCCCHHHCCCCEEEHHHHHHHHHHHH
EARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEA
HHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCH
QFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLL
HEEECCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCHHHHC
GYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAP
CCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEEC
PNEEPWISLPEGAWK
CCCCCCEECCCCCCC
>Mature Secondary Structure 
ARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAR
CCCCCHHHHHHHCCCCCCCCHHCCCEEEECCCCCCCCHHHCCCCEEEHHHHHHHHHHHH
EARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEA
HHHHHHHCCCEEECCEEEECCCCCCCHHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCH
QFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLL
HEEECCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCHHHHC
GYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAP
CCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEEEEEEEC
PNEEPWISLPEGAWK
CCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA