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The map label for this gene is rps17p [H]

Identifier: 124028164

GI number: 124028164

Start: 1312746

End: 1313096

Strand: Direct

Name: rps17p [H]

Synonym: Hbut_1309

Alternate gene names: 124028164

Gene position: 1312746-1313096 (Clockwise)

Preceding gene: 124028163

Following gene: 124028165

Centisome position: 78.74

GC content: 52.42

Gene sequence:

>351_bases
TTGTCCGTGCGGGTGAGAAACGTAGGTATACCAGGGGTTAAGCCCCCAGAGCGAACCTGCAACGACCCCAAGTGTCCGTG
GCACGGTAAGGTTAGGGTTAGAGGCCTCATACTCACCGGTGTAGTTATCAAGAACAAGATGAAGAATACTGTGGTTGTAG
AGAGGGAGTACCTTTACTACGACAGGAAGTACAAGAGGTATGAGAGGCGCCGTAGCAGGATACACGCCCACAACCCGCCA
TGCATCAACGCGCAGCCAGGAGACATAGTAATCATTGGCGAGACTAGGCCGCTAGCAAAGACAGTACACTTCGTAGTGCT
TGGCGTTGTAGGAAAGAAGCCGTTGAGCTAG

Upstream 100 bases:

>100_bases
CTGCCTGGGGGCTCCTGGGTTGTTGTTAGAGGAGAGGAAATAGCCGGGAGTCTAGCTGAGCGTGTTAAGAGGCTGGGTAG
GCTAAAGGGGGTAGGATGGC

Downstream 100 bases:

>100_bases
CTTGGCGGGAAACCCTATTACTAGGCGTCCGCTACGCATAGCCCCAACGCGGGTGGGTGGAATAGCATGCCCAAGGGTGC
TGCTGGAGCTGGTCCACGCA

Product: 30S ribosomal protein S17P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MSVRVRNVGIPGVKPPERTCNDPKCPWHGKVRVRGLILTGVVIKNKMKNTVVVEREYLYYDRKYKRYERRRSRIHAHNPP
CINAQPGDIVIIGETRPLAKTVHFVVLGVVGKKPLS

Sequences:

>Translated_116_residues
MSVRVRNVGIPGVKPPERTCNDPKCPWHGKVRVRGLILTGVVIKNKMKNTVVVEREYLYYDRKYKRYERRRSRIHAHNPP
CINAQPGDIVIIGETRPLAKTVHFVVLGVVGKKPLS
>Mature_115_residues
SVRVRNVGIPGVKPPERTCNDPKCPWHGKVRVRGLILTGVVIKNKMKNTVVVEREYLYYDRKYKRYERRRSRIHAHNPPC
INAQPGDIVIIGETRPLAKTVHFVVLGVVGKKPLS

Specific function: One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA [H]

COG id: COG0186

COG function: function code J; Ribosomal protein S17

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S17P family [H]

Homologues:

Organism=Homo sapiens, GI4506681, Length=110, Percent_Identity=50, Blast_Score=102, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17542016, Length=110, Percent_Identity=54.5454545454545, Blast_Score=110, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6320228, Length=108, Percent_Identity=45.3703703703704, Blast_Score=91, Evalue=4e-20,
Organism=Saccharomyces cerevisiae, GI6319522, Length=108, Percent_Identity=45.3703703703704, Blast_Score=91, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24652922, Length=111, Percent_Identity=50.4504504504504, Blast_Score=103, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24652924, Length=108, Percent_Identity=50, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000266
- InterPro:   IPR019978
- ProDom:   PD001295 [H]

Pfam domain/function: PF00366 Ribosomal_S17 [H]

EC number: NA

Molecular weight: Translated: 13266; Mature: 13135

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVRVRNVGIPGVKPPERTCNDPKCPWHGKVRVRGLILTGVVIKNKMKNTVVVEREYLYY
CCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEHHCCCCCEEEEEHHHHHH
DRKYKRYERRRSRIHAHNPPCINAQPGDIVIIGETRPLAKTVHFVVLGVVGKKPLS
HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHEEECCCCCCCC
>Mature Secondary Structure 
SVRVRNVGIPGVKPPERTCNDPKCPWHGKVRVRGLILTGVVIKNKMKNTVVVEREYLYY
CEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEHHCCCCCEEEEEHHHHHH
DRKYKRYERRRSRIHAHNPPCINAQPGDIVIIGETRPLAKTVHFVVLGVVGKKPLS
HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]