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The map label for this gene is rnp1

Identifier: 124028163

GI number: 124028163

Start: 1312451

End: 1312786

Strand: Direct

Name: rnp1

Synonym: Hbut_1308

Alternate gene names: 124028163

Gene position: 1312451-1312786 (Clockwise)

Preceding gene: 124028162

Following gene: 124028164

Centisome position: 78.72

GC content: 56.55

Gene sequence:

>336_bases
TTGAAGCGTACTGCGTGGAACATTGTTTTCCACAGCCTCATAGGTCTCCGCGCTCGCGTCCTCGCTACGAGTGACCCGGG
CCTCCGCGGTCTCGAGGGCGTAGTTGTTGAGGAGACTAGGCACAGTCTAGTCGTCGAGACGAGGGATGGGCGGAGGGTTC
GTGTACTAAAGGCAAACTCTATTTTCCTCTTCCAGCTGCCTGGGGGCTCCTGGGTTGTTGTTAGAGGAGAGGAAATAGCC
GGGAGTCTAGCTGAGCGTGTTAAGAGGCTGGGTAGGCTAAAGGGGGTAGGATGGCTTGTCCGTGCGGGTGAGAAACGTAG
GTATACCAGGGGTTAA

Upstream 100 bases:

>100_bases
TCGCCAGGATCTTGACAGTTATGCGTGAGGAAGAGCTTGCAAAGCAGCGCGGCGAGAAGGGGAAACGCTAGGACTCCTGT
CTTGGCGCTGGGGGCTTGTT

Downstream 100 bases:

>100_bases
GCCCCCAGAGCGAACCTGCAACGACCCCAAGTGTCCGTGGCACGGTAAGGTTAGGGTTAGAGGCCTCATACTCACCGGTG
TAGTTATCAAGAACAAGATG

Product: ribonuclease P protein component 1

Products: NA

Alternate protein names: RNase P component 1

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MKRTAWNIVFHSLIGLRARVLATSDPGLRGLEGVVVEETRHSLVVETRDGRRVRVLKANSIFLFQLPGGSWVVVRGEEIA
GSLAERVKRLGRLKGVGWLVRAGEKRRYTRG

Sequences:

>Translated_111_residues
MKRTAWNIVFHSLIGLRARVLATSDPGLRGLEGVVVEETRHSLVVETRDGRRVRVLKANSIFLFQLPGGSWVVVRGEEIA
GSLAERVKRLGRLKGVGWLVRAGEKRRYTRG
>Mature_111_residues
MKRTAWNIVFHSLIGLRARVLATSDPGLRGLEGVVVEETRHSLVVETRDGRRVRVLKANSIFLFQLPGGSWVVVRGEEIA
GSLAERVKRLGRLKGVGWLVRAGEKRRYTRG

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends

COG id: COG1588

COG function: function code J; RNase P/RNase MRP subunit p29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 1 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNP1_HYPBU (A2BMC7)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001013483.1
- ProteinModelPortal:   A2BMC7
- SMR:   A2BMC7
- STRING:   A2BMC7
- GeneID:   4782900
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_1308
- eggNOG:   arNOG12604
- HOGENOM:   HBG704950
- OMA:   GEYIRIS
- BioCyc:   HBUT415426:HBUT_1308-MONOMER
- HAMAP:   MF_00754
- InterPro:   IPR002730
- Gene3D:   G3DSA:2.30.30.210

Pfam domain/function: PF01868 UPF0086; SSF101744 RNase_P_Rpp29

EC number: =3.1.26.5

Molecular weight: Translated: 12432; Mature: 12432

Theoretical pI: Translated: 12.15; Mature: 12.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTAWNIVFHSLIGLRARVLATSDPGLRGLEGVVVEETRHSLVVETRDGRRVRVLKANS
CCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEECCC
IFLFQLPGGSWVVVRGEEIAGSLAERVKRLGRLKGVGWLVRAGEKRRYTRG
EEEEEECCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
>Mature Secondary Structure
MKRTAWNIVFHSLIGLRARVLATSDPGLRGLEGVVVEETRHSLVVETRDGRRVRVLKANS
CCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCEEEECCCCEEEEECCCCCEEEEEECCC
IFLFQLPGGSWVVVRGEEIAGSLAERVKRLGRLKGVGWLVRAGEKRRYTRG
EEEEEECCCCEEEEECHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA