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The map label for this gene is kaiC [C]

Identifier: 124027515

GI number: 124027515

Start: 609899

End: 611335

Strand: Direct

Name: kaiC [C]

Synonym: Hbut_0633

Alternate gene names: 124027515

Gene position: 609899-611335 (Clockwise)

Preceding gene: 124027514

Following gene: 124027516

Centisome position: 36.58

GC content: 53.58

Gene sequence:

>1437_bases
ATGAATTGTTGCGATAAAGCCTCGGACCCCAACTCTTTTGTATGGGGTGTCCGTGCACTCGACAAGATGCTTGTTGGTAG
TCTTAGGCCGGGCACTACAGTCCTTATAGCGGGGAATCCCGGTGCGGGCAAAACTATTCTAGCGGCATCAATATGTTACG
TTAACGCGTTCCGCGGAGTTCCATGTCTCTACGTCTCGCTGCAGGAGTCTAGGGAGAAGTTTCTATGGTACATGGCTAGG
CTCGGTATGAACTTTTCCGAGTTGGAGGAGAAGGGGCTCTTTGAATACCGTGATGTACCCCTTATTGTTGACCGTGCTGC
TGTTGGACACGTGCTCGAGGACATAATTAGTGCTGTAACAAGCCATGGCCATAGGGTGATAGTAATTGATAGTTTTACCC
CCATTGGCCTACTGGTTGGCGGTACCGTCGAGGCTCGGGAGGTGCTACAGAACTTCTTCTACAACCTCGCTAGGCTAACC
AAGGGCCTAGTAGTTATCGTTGCAGAGGTGCCCTACGGCTCCGAGAAAATAGAGCTTGGCGGGATAGAGTTTGTAGCAGA
TATAGTCATCATGCTCAAGCAGAAGGTGGAAAACGGTTTCATAACAAGGCTCATGGAGGTGAGGAAGATCCGCGGGGCGC
CAATAACAACAGCAGAGATACCATTCACCATAGTGGAGGGCAAGGGGCTAGTTGCATGCCCCCCGCCAATGATTGAGGAT
ATACCCGCGCCGAGGAGGGAGGTGAAGCTCCAGCTACCCTGCACAGCTCTCGAGGAGGCTATAGGCCCCCTATACCCAGG
CCACCACGTAACAGTGTTCTACCCCCCAGATGGCAGGGCTCGGTACCTCCTAGTACCACTACTTGCTGGCTTCATACTCT
CCAACAAGCTGAGAACACTGATTATAAGCTATGAGAGGAGCCCCGAGGAGATCATGGATGGTCTCGTCGAGCAGCTTGGC
GAGCTAGCTGGAGATGCTAAGGAGAGGCTAGAGGAGCTTGTCCGCGTAACCTCCTTCAACCCGGCCTCGATGTCCCTAGA
GGAGCTCTATGCTAGGGAGCTACAAGAAATAGAGGAGTACCAGCCCTTGCTACTCGTCTTTGACCGCTCCGACATACCAT
ACCTGGTACACGGTACTAGGGACGAGCACCGCTACTACATGTACCTGCGCAACGAGCTGCTAATGTTTCGCTCCAAGGGA
ATGACGACGATAAGGGTGCTAGCACTTATCGACGAGAAGATGTACCGGCTAAACACGAGCATGGCCGACATAGTGTTAAG
GCTCACCTACCGCAGGAGCGGAGAGCAGCACCGCCCGAGGCTCTATGTGTGGCGTAATGGCCGCAACCCCAAGGTGTTGG
GGCCAGCAGCCCTCGAGCACTGTAGGAGCGAGGTACAATCAGTGATAGGGGGTCTACTTGGCTCTAGAGTAGGCTAG

Upstream 100 bases:

>100_bases
CGTACTAGTTACGGCTTGCCGGCAGAGCGTGGCTAAACCTGTAAAAATAGGGCTGAGTAGAACCTGGTATTGTCCGGAGC
CCGCGTGGGTGTATAGTGAA

Downstream 100 bases:

>100_bases
AGGACTCTCCAGATCTCTCTAGAGCTCTACCTTGCATTTGTGGGAGCGTATTTATCCTCTAGCGGGGATTCTGCAGCTGC
AGACACGGGCCGCCCGGGTT

Product: putative RecA ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MNCCDKASDPNSFVWGVRALDKMLVGSLRPGTTVLIAGNPGAGKTILAASICYVNAFRGVPCLYVSLQESREKFLWYMAR
LGMNFSELEEKGLFEYRDVPLIVDRAAVGHVLEDIISAVTSHGHRVIVIDSFTPIGLLVGGTVEAREVLQNFFYNLARLT
KGLVVIVAEVPYGSEKIELGGIEFVADIVIMLKQKVENGFITRLMEVRKIRGAPITTAEIPFTIVEGKGLVACPPPMIED
IPAPRREVKLQLPCTALEEAIGPLYPGHHVTVFYPPDGRARYLLVPLLAGFILSNKLRTLIISYERSPEEIMDGLVEQLG
ELAGDAKERLEELVRVTSFNPASMSLEELYARELQEIEEYQPLLLVFDRSDIPYLVHGTRDEHRYYMYLRNELLMFRSKG
MTTIRVLALIDEKMYRLNTSMADIVLRLTYRRSGEQHRPRLYVWRNGRNPKVLGPAALEHCRSEVQSVIGGLLGSRVG

Sequences:

>Translated_478_residues
MNCCDKASDPNSFVWGVRALDKMLVGSLRPGTTVLIAGNPGAGKTILAASICYVNAFRGVPCLYVSLQESREKFLWYMAR
LGMNFSELEEKGLFEYRDVPLIVDRAAVGHVLEDIISAVTSHGHRVIVIDSFTPIGLLVGGTVEAREVLQNFFYNLARLT
KGLVVIVAEVPYGSEKIELGGIEFVADIVIMLKQKVENGFITRLMEVRKIRGAPITTAEIPFTIVEGKGLVACPPPMIED
IPAPRREVKLQLPCTALEEAIGPLYPGHHVTVFYPPDGRARYLLVPLLAGFILSNKLRTLIISYERSPEEIMDGLVEQLG
ELAGDAKERLEELVRVTSFNPASMSLEELYARELQEIEEYQPLLLVFDRSDIPYLVHGTRDEHRYYMYLRNELLMFRSKG
MTTIRVLALIDEKMYRLNTSMADIVLRLTYRRSGEQHRPRLYVWRNGRNPKVLGPAALEHCRSEVQSVIGGLLGSRVG
>Mature_478_residues
MNCCDKASDPNSFVWGVRALDKMLVGSLRPGTTVLIAGNPGAGKTILAASICYVNAFRGVPCLYVSLQESREKFLWYMAR
LGMNFSELEEKGLFEYRDVPLIVDRAAVGHVLEDIISAVTSHGHRVIVIDSFTPIGLLVGGTVEAREVLQNFFYNLARLT
KGLVVIVAEVPYGSEKIELGGIEFVADIVIMLKQKVENGFITRLMEVRKIRGAPITTAEIPFTIVEGKGLVACPPPMIED
IPAPRREVKLQLPCTALEEAIGPLYPGHHVTVFYPPDGRARYLLVPLLAGFILSNKLRTLIISYERSPEEIMDGLVEQLG
ELAGDAKERLEELVRVTSFNPASMSLEELYARELQEIEEYQPLLLVFDRSDIPYLVHGTRDEHRYYMYLRNELLMFRSKG
MTTIRVLALIDEKMYRLNTSMADIVLRLTYRRSGEQHRPRLYVWRNGRNPKVLGPAALEHCRSEVQSVIGGLLGSRVG

Specific function: May Play A Role In The Repair Of Endogenous Alkylation Damage. [C]

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014774
- InterPro:   IPR013503
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 53606; Mature: 53606

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS51146 KAIC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCCDKASDPNSFVWGVRALDKMLVGSLRPGTTVLIAGNPGAGKTILAASICYVNAFRGV
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
PCLYVSLQESREKFLWYMARLGMNFSELEEKGLFEYRDVPLIVDRAAVGHVLEDIISAVT
CEEEEEHHHHHHHHHHHHHHHCCCHHHHHHCCCCEECCCCEEEHHHHHHHHHHHHHHHHH
SHGHRVIVIDSFTPIGLLVGGTVEAREVLQNFFYNLARLTKGLVVIVAEVPYGSEKIELG
CCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEC
GIEFVADIVIMLKQKVENGFITRLMEVRKIRGAPITTAEIPFTIVEGKGLVACPPPMIED
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEECCCCEEEECCCCEEECCCCHHHC
IPAPRREVKLQLPCTALEEAIGPLYPGHHVTVFYPPDGRARYLLVPLLAGFILSNKLRTL
CCCCHHHEEEECCHHHHHHHHCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHCCCEEE
IISYERSPEEIMDGLVEQLGELAGDAKERLEELVRVTSFNPASMSLEELYARELQEIEEY
EEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
QPLLLVFDRSDIPYLVHGTRDEHRYYMYLRNELLMFRSKGMTTIRVLALIDEKMYRLNTS
CCEEEEEECCCCCEEEECCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH
MADIVLRLTYRRSGEQHRPRLYVWRNGRNPKVLGPAALEHCRSEVQSVIGGLLGSRVG
HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNCCDKASDPNSFVWGVRALDKMLVGSLRPGTTVLIAGNPGAGKTILAASICYVNAFRGV
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC
PCLYVSLQESREKFLWYMARLGMNFSELEEKGLFEYRDVPLIVDRAAVGHVLEDIISAVT
CEEEEEHHHHHHHHHHHHHHHCCCHHHHHHCCCCEECCCCEEEHHHHHHHHHHHHHHHHH
SHGHRVIVIDSFTPIGLLVGGTVEAREVLQNFFYNLARLTKGLVVIVAEVPYGSEKIELG
CCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEC
GIEFVADIVIMLKQKVENGFITRLMEVRKIRGAPITTAEIPFTIVEGKGLVACPPPMIED
CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEECCCCEEEECCCCEEECCCCHHHC
IPAPRREVKLQLPCTALEEAIGPLYPGHHVTVFYPPDGRARYLLVPLLAGFILSNKLRTL
CCCCHHHEEEECCHHHHHHHHCCCCCCCEEEEEECCCCCCEEEHHHHHHHHHHHCCCEEE
IISYERSPEEIMDGLVEQLGELAGDAKERLEELVRVTSFNPASMSLEELYARELQEIEEY
EEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
QPLLLVFDRSDIPYLVHGTRDEHRYYMYLRNELLMFRSKGMTTIRVLALIDEKMYRLNTS
CCEEEEEECCCCCEEEECCCCCCEEEEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCH
MADIVLRLTYRRSGEQHRPRLYVWRNGRNPKVLGPAALEHCRSEVQSVIGGLLGSRVG
HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]