| Definition | Hyperthermus butylicus DSM 5456 chromosome, complete genome. |
|---|---|
| Accession | NC_008818 |
| Length | 1,667,163 |
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The map label for this gene is oppD [H]
Identifier: 124027490
GI number: 124027490
Start: 577282
End: 578319
Strand: Reverse
Name: oppD [H]
Synonym: Hbut_0606
Alternate gene names: 124027490
Gene position: 578319-577282 (Counterclockwise)
Preceding gene: 124027491
Following gene: 124027489
Centisome position: 34.69
GC content: 54.43
Gene sequence:
>1038_bases ATGGGTGGCGGTATGCTTCGCTGCCGGGACCCCATAGTCGAGGTTCGCGACCTGTACGTCAACTTCTACACGTATGCCGG CGTAGTCAAGGCGATCTACGGTGTAAGCTTCTGCATAGAGAGGGGCGAGACGTACTGCCTGGTTGGCGAGACCGGCTGCG GCAAGAGTGTAACCTCTAGGGCGCTAACGAGGCTCATACAACCTCCTGGTAGGATTGAGAAGGGCGAGATATACTACTAC CCAGAGCCGGGCAAGAGGATAGACATTATGAGGCTGAGTGAGGAGGAGCTACGCCGCATAAGGGGTGCTGAGATAGCATA CATCTTCCAGGATCCAGGCTCAGCGCTAGACCCACTATACACTATTGGCTACCAGATCTCGGAGACCATGCTTGTACATG ACATGATAAAGAAGATAAAGGAGGGCTTCACAAGGGCCGTGGAGCTCTTGAAGAAGACGTTGATACCAGACCCGGAGAGG AGGGTGAAGTCTTACCCCCACGAGCTGAGCGGCGGGATGAAGCAGAGAGCAGTGATAAGCATGAGCCTTGCAAACAATCC CAAGCTAATAATAGCCGATGAACCTACGACAGCGCTAGACGTGACTATTCAAGCTCAGATAATGGAGCTGCTACGCGAGC TCAAGAGGAGGGAGGGTCTAACCCTGCTACTCATCACACACAACATGGGCCTCGTAGCAGAGATGTGCGACCGAGTTGCA GTAATGTATGCTGGCATCATAGTAGAGGAGGCACCCACAGAGGAGCTGTTCAGCAACCCTCTGCACCCTTACACTCAGCT CCTCCTAAGGGCGGTACCGGACCCCACGAAGAAGATAGAGAAGCTGGAATCAATACCGGGCACTGTGCCCAACCTCATTC ACCCGCCGCCGGGCTGCAGATTCCATCCACGATGTCCCTACATGGCAGAGATCTGTCGTCAGGATAGGCCGCCGGAGATA TGGGTTAACGAGAGGCACCGCGTAGCCTGCTGGAGATACATAGACAAACATCCCAACCCAGCCAGGCTTATCCATTGA
Upstream 100 bases:
>100_bases AGAGACATACTAGACCCTAGGACTAGGAGGAGCATAGAGTTCAAGGTGAAGAAGGTGGTTGAGGCTGAGGAAGAGGCAGC TGGTGGGGGTGGCGAGTGAA
Downstream 100 bases:
>100_bases TTTTATTTACGCTAAGCCTTCGGGTTGTATGATGTATATAAGGCTGTGCCGGGCCCCCCAACTTGAGTCTCTAAGCCGTG TGAGGTGCCGTATAGGTGGC
Product: oligopeptide transport ATP-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: Stage 0 sporulation protein KD [H]
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MGGGMLRCRDPIVEVRDLYVNFYTYAGVVKAIYGVSFCIERGETYCLVGETGCGKSVTSRALTRLIQPPGRIEKGEIYYY PEPGKRIDIMRLSEEELRRIRGAEIAYIFQDPGSALDPLYTIGYQISETMLVHDMIKKIKEGFTRAVELLKKTLIPDPER RVKSYPHELSGGMKQRAVISMSLANNPKLIIADEPTTALDVTIQAQIMELLRELKRREGLTLLLITHNMGLVAEMCDRVA VMYAGIIVEEAPTEELFSNPLHPYTQLLLRAVPDPTKKIEKLESIPGTVPNLIHPPPGCRFHPRCPYMAEICRQDRPPEI WVNERHRVACWRYIDKHPNPARLIH
Sequences:
>Translated_345_residues MGGGMLRCRDPIVEVRDLYVNFYTYAGVVKAIYGVSFCIERGETYCLVGETGCGKSVTSRALTRLIQPPGRIEKGEIYYY PEPGKRIDIMRLSEEELRRIRGAEIAYIFQDPGSALDPLYTIGYQISETMLVHDMIKKIKEGFTRAVELLKKTLIPDPER RVKSYPHELSGGMKQRAVISMSLANNPKLIIADEPTTALDVTIQAQIMELLRELKRREGLTLLLITHNMGLVAEMCDRVA VMYAGIIVEEAPTEELFSNPLHPYTQLLLRAVPDPTKKIEKLESIPGTVPNLIHPPPGCRFHPRCPYMAEICRQDRPPEI WVNERHRVACWRYIDKHPNPARLIH >Mature_344_residues GGGMLRCRDPIVEVRDLYVNFYTYAGVVKAIYGVSFCIERGETYCLVGETGCGKSVTSRALTRLIQPPGRIEKGEIYYYP EPGKRIDIMRLSEEELRRIRGAEIAYIFQDPGSALDPLYTIGYQISETMLVHDMIKKIKEGFTRAVELLKKTLIPDPERR VKSYPHELSGGMKQRAVISMSLANNPKLIIADEPTTALDVTIQAQIMELLRELKRREGLTLLLITHNMGLVAEMCDRVAV MYAGIIVEEAPTEELFSNPLHPYTQLLLRAVPDPTKKIEKLESIPGTVPNLIHPPPGCRFHPRCPYMAEICRQDRPPEIW VNERHRVACWRYIDKHPNPARLIH
Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI9961250, Length=252, Percent_Identity=31.3492063492063, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI4505771, Length=252, Percent_Identity=31.3492063492063, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI9961252, Length=252, Percent_Identity=31.3492063492063, Blast_Score=89, Evalue=5e-18, Organism=Homo sapiens, GI255708477, Length=253, Percent_Identity=28.4584980237154, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI148612844, Length=232, Percent_Identity=28.8793103448276, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI21536378, Length=237, Percent_Identity=27.0042194092827, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI42741659, Length=250, Percent_Identity=30.4, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI27477115, Length=221, Percent_Identity=27.6018099547511, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI42490749, Length=247, Percent_Identity=27.5303643724696, Blast_Score=79, Evalue=9e-15, Organism=Homo sapiens, GI153792144, Length=218, Percent_Identity=26.605504587156, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI9665248, Length=233, Percent_Identity=27.4678111587983, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI171184400, Length=238, Percent_Identity=30.672268907563, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI27262624, Length=216, Percent_Identity=27.3148148148148, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI27262626, Length=216, Percent_Identity=27.3148148148148, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI27436953, Length=235, Percent_Identity=25.531914893617, Blast_Score=66, Evalue=6e-11, Organism=Escherichia coli, GI1789963, Length=329, Percent_Identity=44.3768996960486, Blast_Score=285, Evalue=3e-78, Organism=Escherichia coli, GI48994883, Length=327, Percent_Identity=43.4250764525994, Blast_Score=270, Evalue=1e-73, Organism=Escherichia coli, GI1787759, Length=323, Percent_Identity=40.8668730650155, Blast_Score=250, Evalue=9e-68, Organism=Escherichia coli, GI145693107, Length=265, Percent_Identity=41.8867924528302, Blast_Score=223, Evalue=1e-59, Organism=Escherichia coli, GI1787548, Length=309, Percent_Identity=37.2168284789644, Blast_Score=219, Evalue=2e-58, Organism=Escherichia coli, GI1787500, Length=337, Percent_Identity=38.5756676557863, Blast_Score=207, Evalue=7e-55, Organism=Escherichia coli, GI1789962, Length=342, Percent_Identity=34.2105263157895, Blast_Score=203, Evalue=1e-53, Organism=Escherichia coli, GI1788506, Length=267, Percent_Identity=41.1985018726592, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI1787758, Length=334, Percent_Identity=35.0299401197605, Blast_Score=178, Evalue=4e-46, Organism=Escherichia coli, GI1789890, Length=242, Percent_Identity=39.6694214876033, Blast_Score=146, Evalue=2e-36, Organism=Escherichia coli, GI48994997, Length=248, Percent_Identity=31.8548387096774, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1789032, Length=280, Percent_Identity=30.7142857142857, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1786398, Length=282, Percent_Identity=31.5602836879433, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787547, Length=266, Percent_Identity=30.4511278195489, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=36.697247706422, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI1788225, Length=261, Percent_Identity=31.8007662835249, Blast_Score=112, Evalue=5e-26, Organism=Escherichia coli, GI1790162, Length=259, Percent_Identity=28.5714285714286, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI87081834, Length=205, Percent_Identity=32.6829268292683, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI1787712, Length=246, Percent_Identity=28.8617886178862, Blast_Score=101, Evalue=9e-23, Organism=Escherichia coli, GI1789672, Length=256, Percent_Identity=29.296875, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI87081791, Length=289, Percent_Identity=30.1038062283737, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787029, Length=254, Percent_Identity=26.7716535433071, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1786703, Length=242, Percent_Identity=29.7520661157025, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI48994943, Length=246, Percent_Identity=27.6422764227642, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787105, Length=245, Percent_Identity=31.4285714285714, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1790739, Length=239, Percent_Identity=28.0334728033473, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788450, Length=267, Percent_Identity=24.7191011235955, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788644, Length=132, Percent_Identity=37.1212121212121, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789873, Length=226, Percent_Identity=30.5309734513274, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787089, Length=246, Percent_Identity=30.4878048780488, Blast_Score=85, Evalue=7e-18, Organism=Escherichia coli, GI1787370, Length=245, Percent_Identity=27.3469387755102, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788761, Length=256, Percent_Identity=25, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI87082267, Length=238, Percent_Identity=27.7310924369748, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1786803, Length=225, Percent_Identity=28.4444444444444, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786319, Length=258, Percent_Identity=26.3565891472868, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1786563, Length=234, Percent_Identity=29.0598290598291, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1786872, Length=215, Percent_Identity=27.906976744186, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87081709, Length=254, Percent_Identity=24.4094488188976, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=28.9473684210526, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1789991, Length=225, Percent_Identity=27.5555555555556, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1790467, Length=243, Percent_Identity=25.1028806584362, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI48995001, Length=225, Percent_Identity=27.5555555555556, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787164, Length=89, Percent_Identity=37.0786516853933, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789864, Length=262, Percent_Identity=24.4274809160305, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787792, Length=228, Percent_Identity=28.9473684210526, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1786698, Length=203, Percent_Identity=25.615763546798, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1790525, Length=219, Percent_Identity=28.310502283105, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1789586, Length=245, Percent_Identity=24.4897959183673, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1788210, Length=225, Percent_Identity=27.5555555555556, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17541710, Length=244, Percent_Identity=31.1475409836066, Blast_Score=98, Evalue=8e-21, Organism=Caenorhabditis elegans, GI115535101, Length=239, Percent_Identity=28.8702928870293, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17567269, Length=239, Percent_Identity=29.2887029288703, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI193202349, Length=231, Percent_Identity=29.004329004329, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17567265, Length=240, Percent_Identity=28.3333333333333, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI25146777, Length=282, Percent_Identity=28.3687943262411, Blast_Score=78, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17558664, Length=238, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193209708, Length=266, Percent_Identity=29.3233082706767, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71984940, Length=248, Percent_Identity=29.4354838709677, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17565938, Length=264, Percent_Identity=28.030303030303, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17543740, Length=256, Percent_Identity=26.953125, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71992285, Length=259, Percent_Identity=28.1853281853282, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193211017, Length=239, Percent_Identity=27.6150627615063, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI193211015, Length=239, Percent_Identity=27.6150627615063, Blast_Score=71, Evalue=8e-13, Organism=Caenorhabditis elegans, GI71996809, Length=239, Percent_Identity=27.6150627615063, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115533608, Length=223, Percent_Identity=26.0089686098655, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71992290, Length=240, Percent_Identity=27.5, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI212646699, Length=228, Percent_Identity=25.8771929824561, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17533971, Length=248, Percent_Identity=25, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569145, Length=230, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17569143, Length=228, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=294, Percent_Identity=25.5102040816327, Blast_Score=84, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6320874, Length=270, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6322640, Length=267, Percent_Identity=27.7153558052434, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136662, Length=276, Percent_Identity=27.1739130434783, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24653245, Length=235, Percent_Identity=28.936170212766, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI281363262, Length=235, Percent_Identity=28.936170212766, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI221500365, Length=227, Percent_Identity=27.7533039647577, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI85726357, Length=259, Percent_Identity=26.2548262548263, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24641565, Length=234, Percent_Identity=26.0683760683761, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI116007184, Length=227, Percent_Identity=27.7533039647577, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 39280; Mature: 39148
Theoretical pI: Translated: 8.14; Mature: 8.14
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGGMLRCRDPIVEVRDLYVNFYTYAGVVKAIYGVSFCIERGETYCLVGETGCGKSVTSR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH ALTRLIQPPGRIEKGEIYYYPEPGKRIDIMRLSEEELRRIRGAEIAYIFQDPGSALDPLY HHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHCCCEEEEEEECCCCHHCHHH TIGYQISETMLVHDMIKKIKEGFTRAVELLKKTLIPDPERRVKSYPHELSGGMKQRAVIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHCCCCHHHHEEE MSLANNPKLIIADEPTTALDVTIQAQIMELLRELKRREGLTLLLITHNMGLVAEMCDRVA EEECCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH VMYAGIIVEEAPTEELFSNPLHPYTQLLLRAVPDPTKKIEKLESIPGTVPNLIHPPPGCR HHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCC FHPRCPYMAEICRQDRPPEIWVNERHRVACWRYIDKHPNPARLIH CCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure GGGMLRCRDPIVEVRDLYVNFYTYAGVVKAIYGVSFCIERGETYCLVGETGCGKSVTSR CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH ALTRLIQPPGRIEKGEIYYYPEPGKRIDIMRLSEEELRRIRGAEIAYIFQDPGSALDPLY HHHHHHCCCCCCCCCEEEEECCCCCEEEEEECCHHHHHHHCCCEEEEEEECCCCHHCHHH TIGYQISETMLVHDMIKKIKEGFTRAVELLKKTLIPDPERRVKSYPHELSGGMKQRAVIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHCCCCHHHHEEE MSLANNPKLIIADEPTTALDVTIQAQIMELLRELKRREGLTLLLITHNMGLVAEMCDRVA EEECCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHH VMYAGIIVEEAPTEELFSNPLHPYTQLLLRAVPDPTKKIEKLESIPGTVPNLIHPPPGCR HHHHHHHCCCCCHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCC FHPRCPYMAEICRQDRPPEIWVNERHRVACWRYIDKHPNPARLIH CCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1901616; 1899858; 9384377 [H]