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The map label for this gene is rbcL [H]

Identifier: 124027390

GI number: 124027390

Start: 484308

End: 485633

Strand: Reverse

Name: rbcL [H]

Synonym: Hbut_0503

Alternate gene names: 124027390

Gene position: 485633-484308 (Counterclockwise)

Preceding gene: 124027396

Following gene: 124027387

Centisome position: 29.13

GC content: 52.49

Gene sequence:

>1326_bases
ATGCACGAGCACTTTGACAGCATCTACCTCGAGTTTGTCGACGAAAGCTATAAGCCCGGCAAGGACGAGGTCATAGCCGT
TTTCCGTGTTACACCAGCCCAGGGCATTTCAATAAAGGATGCAGCTGGCCGTATAGCTGCCGAAAGCAGCGTGGGTACCT
GGACAACATTGAGCGTTAAGCCTAGCTGGTTTGAGAAGCTAAAGGCTAAGGCTTACCGATTCCATGACCTTGGCGATGGA
AGCTGGCTGGTATGGGTTGCATATCCTGTCGAGCTTTTCGAGGAAGGCAGCATACCAAACTTTGCTAGCAGCATTCTAGG
CAACATCTTCGGCATGAAGGCTATTGCTGGTCTCCGTGTCGAGGACGTCTACTTCCCACCAAGCTATCTTGAGACCTTCC
CAGGACCGAATAAGGGCATCCAGGGTGTACGCGAAATACTCGGCATCAAGGATAGACCGATACTTGCAACCGTGCCAAAA
CCAAAGCTCGGTTACACCCCGGAGGAGTACGGCAGGGTAGCCTATGAGATCCTTATCGGCGGCATAGACCTAGTTAAGGA
CGATGAAAACTTTGCAAGCCAGCCCTTCTGCAGGTTTGAAGCTAGGCTTAAAGAGGTAATGAAGGCTATTGATAGGGCCG
AGAAAGAGACAGGAGAGCGCAAAGGCTACCTAGCAAACGTTACAGCGCCAATAAGGGAGATGGAGAAGCGTATAAAGCTT
GTGGCAGACTATGGGAACAAGTTCATAATGATAGACTTTCTCACAGCTGGCTGGGCAGCCCTCCAACACGCGAGGGAGCT
GGCAGAGGAATACGACCTGGCCATACATGGCCACCGCGCGTTCCATGCAGCGTTCACGAGAAACCCAAAGCATGGCGTCT
CAATGTTCCTAGTAGCCAAGCTAGCCAGGATGGCTGGTGTAGATCATGTACATGTGGGGACACCCGGCGTGGGCAAAATG
GATGCAAAGACTAGGGAGGTTCTAGAGCATACAAGGATTGTTAGAGAGCAGTACTACCGGCCCAAGGAGGGCGACCTCTT
CCACCTAGAACAGCCGTGGAGCAATATTAAGCCCGTCTTCCCAGTTGCTAGTGGAGGCCTACACCCAGGAACACTACCGG
AAGTCATAAGGGTTATGGGCAAGGACATAATAATGCAGGTTGGCGGTGGAGTTCTAGGCCACCCCGATGGCCCAGAAGCT
GGTGCTAGAGCTGTGAGGCAGGCAGTAGAAGCAGCCATGAAGGGCATATCGTTAGACGAGTATGCCAGGGAGCACCGTGA
GCTGGCACGTGCACTAGAAAAATGGGGTTATGTCAGACCCGTTTAG

Upstream 100 bases:

>100_bases
AACCACTCTCCAACCACATGTCCAGCTGCAGCGACACCATTATATATAAGCCTGGAGCTATAGCGACTCTAGAGATTAGG
CCTCCTAGGTGTACAGCCCT

Downstream 100 bases:

>100_bases
CCACGATTTTCGCGTTCACATCTATCTTGTTGCCGTGTTATAGAGTGCTGCAACTGTTAGTGGCAGCTCCAGCTCATACC
CTCTCTGCTTCCTGCTAGCC

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO [H]

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MHEHFDSIYLEFVDESYKPGKDEVIAVFRVTPAQGISIKDAAGRIAAESSVGTWTTLSVKPSWFEKLKAKAYRFHDLGDG
SWLVWVAYPVELFEEGSIPNFASSILGNIFGMKAIAGLRVEDVYFPPSYLETFPGPNKGIQGVREILGIKDRPILATVPK
PKLGYTPEEYGRVAYEILIGGIDLVKDDENFASQPFCRFEARLKEVMKAIDRAEKETGERKGYLANVTAPIREMEKRIKL
VADYGNKFIMIDFLTAGWAALQHARELAEEYDLAIHGHRAFHAAFTRNPKHGVSMFLVAKLARMAGVDHVHVGTPGVGKM
DAKTREVLEHTRIVREQYYRPKEGDLFHLEQPWSNIKPVFPVASGGLHPGTLPEVIRVMGKDIIMQVGGGVLGHPDGPEA
GARAVRQAVEAAMKGISLDEYAREHRELARALEKWGYVRPV

Sequences:

>Translated_441_residues
MHEHFDSIYLEFVDESYKPGKDEVIAVFRVTPAQGISIKDAAGRIAAESSVGTWTTLSVKPSWFEKLKAKAYRFHDLGDG
SWLVWVAYPVELFEEGSIPNFASSILGNIFGMKAIAGLRVEDVYFPPSYLETFPGPNKGIQGVREILGIKDRPILATVPK
PKLGYTPEEYGRVAYEILIGGIDLVKDDENFASQPFCRFEARLKEVMKAIDRAEKETGERKGYLANVTAPIREMEKRIKL
VADYGNKFIMIDFLTAGWAALQHARELAEEYDLAIHGHRAFHAAFTRNPKHGVSMFLVAKLARMAGVDHVHVGTPGVGKM
DAKTREVLEHTRIVREQYYRPKEGDLFHLEQPWSNIKPVFPVASGGLHPGTLPEVIRVMGKDIIMQVGGGVLGHPDGPEA
GARAVRQAVEAAMKGISLDEYAREHRELARALEKWGYVRPV
>Mature_441_residues
MHEHFDSIYLEFVDESYKPGKDEVIAVFRVTPAQGISIKDAAGRIAAESSVGTWTTLSVKPSWFEKLKAKAYRFHDLGDG
SWLVWVAYPVELFEEGSIPNFASSILGNIFGMKAIAGLRVEDVYFPPSYLETFPGPNKGIQGVREILGIKDRPILATVPK
PKLGYTPEEYGRVAYEILIGGIDLVKDDENFASQPFCRFEARLKEVMKAIDRAEKETGERKGYLANVTAPIREMEKRIKL
VADYGNKFIMIDFLTAGWAALQHARELAEEYDLAIHGHRAFHAAFTRNPKHGVSMFLVAKLARMAGVDHVHVGTPGVGKM
DAKTREVLEHTRIVREQYYRPKEGDLFHLEQPWSNIKPVFPVASGGLHPGTLPEVIRVMGKDIIMQVGGGVLGHPDGPEA
GARAVRQAVEAAMKGISLDEYAREHRELARALEKWGYVRPV

Specific function: Unknown

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type III subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017712
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 49178; Mature: 49178

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEHFDSIYLEFVDESYKPGKDEVIAVFRVTPAQGISIKDAAGRIAAESSVGTWTTLSVK
CCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEECHHCCCCEECCCCCCEEEEEEC
PSWFEKLKAKAYRFHDLGDGSWLVWVAYPVELFEEGSIPNFASSILGNIFGMKAIAGLRV
HHHHHHHHHHHHHEEECCCCCEEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEE
EDVYFPPSYLETFPGPNKGIQGVREILGIKDRPILATVPKPKLGYTPEEYGRVAYEILIG
EEEECCHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
GIDLVKDDENFASQPFCRFEARLKEVMKAIDRAEKETGERKGYLANVTAPIREMEKRIKL
CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHH
VADYGNKFIMIDFLTAGWAALQHARELAEEYDLAIHGHRAFHAAFTRNPKHGVSMFLVAK
HHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHCCCCHHHHHHHHHH
LARMAGVDHVHVGTPGVGKMDAKTREVLEHTRIVREQYYRPKEGDLFHLEQPWSNIKPVF
HHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC
PVASGGLHPGTLPEVIRVMGKDIIMQVGGGVLGHPDGPEAGARAVRQAVEAAMKGISLDE
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
YAREHRELARALEKWGYVRPV
HHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MHEHFDSIYLEFVDESYKPGKDEVIAVFRVTPAQGISIKDAAGRIAAESSVGTWTTLSVK
CCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCEECHHCCCCEECCCCCCEEEEEEC
PSWFEKLKAKAYRFHDLGDGSWLVWVAYPVELFEEGSIPNFASSILGNIFGMKAIAGLRV
HHHHHHHHHHHHHEEECCCCCEEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEE
EDVYFPPSYLETFPGPNKGIQGVREILGIKDRPILATVPKPKLGYTPEEYGRVAYEILIG
EEEECCHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
GIDLVKDDENFASQPFCRFEARLKEVMKAIDRAEKETGERKGYLANVTAPIREMEKRIKL
CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHH
VADYGNKFIMIDFLTAGWAALQHARELAEEYDLAIHGHRAFHAAFTRNPKHGVSMFLVAK
HHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHCCCCHHHHHHHHHH
LARMAGVDHVHVGTPGVGKMDAKTREVLEHTRIVREQYYRPKEGDLFHLEQPWSNIKPVF
HHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCC
PVASGGLHPGTLPEVIRVMGKDIIMQVGGGVLGHPDGPEAGARAVRQAVEAAMKGISLDE
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHH
YAREHRELARALEKWGYVRPV
HHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9988755; 10512715; 12070156; 11435112 [H]