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The map label for this gene is rpoE [H]

Identifier: 124027330

GI number: 124027330

Start: 424091

End: 424645

Strand: Reverse

Name: rpoE [H]

Synonym: Hbut_0439

Alternate gene names: 124027330

Gene position: 424645-424091 (Counterclockwise)

Preceding gene: 124027331

Following gene: 124027329

Centisome position: 25.47

GC content: 49.55

Gene sequence:

>555_bases
TTGTACGCCATCTATCGTGTAAGGGATGTTGTCAGAATACCCCCCAGCCTCTTCGGTATGTCGCTGGAGGAGGCAGCACT
AAAGGTTCTAACGGAGAAGTATGTAGGCTACGTACACCCCGAGATGGGTGTTATAGTTGCAATATTTGATGTTAAGGTTA
GCGAGGAGGGTAGAGTAATACCGGGTGATGGAGCAACTTACCACGACTCAGAGTATAGTGTCTTGGCCTTCAAGCCCATA
GTCAAGGAGGTTGTTGAGGGTGTAGTTGTGTCTATCCAGCAGTCATTTGCGAGGATAAGCCTAGGTCCCGTCGAGGGCAT
AGCTCATATAAGCCAGGTAATGGATGAACATGTAATATTCGATCCACAGCGTCGTGCGTTCATAGGCGAGCGCACGAGAC
GCATAGTCGAGGTAGGCGATATAGTGAGGACAAGAGTTATCTCAGTATCGATGCCGTCGGAGCCTATTGGCAGGCCGAGA
ATACAGTTAACCATGAGGCAACCATACCTCGGCAAGACTGAGTGGCATAAGCGTAAGAGGATCGAGGCTAAGTAG

Upstream 100 bases:

>100_bases
TTGCATGACGGGCATACTTTAATATTTCCCCAGAGCATGCTTTCGCCGGGTAATCCTAGAGCATACACTACGACTATGTG
GTGCTGGTGTGGGTGACACC

Downstream 100 bases:

>100_bases
ACCTCAAAGGGGTGATAGATCTTGGGTAGGCGGGTAAAGGTGCCACCATTCAAGGCTTGTAGACGGTGTAAGAGCCTTGT
ACCCCGTGAGGCTACACGCT

Product: DNA-directed RNA polymerase subunit E'

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MYAIYRVRDVVRIPPSLFGMSLEEAALKVLTEKYVGYVHPEMGVIVAIFDVKVSEEGRVIPGDGATYHDSEYSVLAFKPI
VKEVVEGVVVSIQQSFARISLGPVEGIAHISQVMDEHVIFDPQRRAFIGERTRRIVEVGDIVRTRVISVSMPSEPIGRPR
IQLTMRQPYLGKTEWHKRKRIEAK

Sequences:

>Translated_184_residues
MYAIYRVRDVVRIPPSLFGMSLEEAALKVLTEKYVGYVHPEMGVIVAIFDVKVSEEGRVIPGDGATYHDSEYSVLAFKPI
VKEVVEGVVVSIQQSFARISLGPVEGIAHISQVMDEHVIFDPQRRAFIGERTRRIVEVGDIVRTRVISVSMPSEPIGRPR
IQLTMRQPYLGKTEWHKRKRIEAK
>Mature_184_residues
MYAIYRVRDVVRIPPSLFGMSLEEAALKVLTEKYVGYVHPEMGVIVAIFDVKVSEEGRVIPGDGATYHDSEYSVLAFKPI
VKEVVEGVVVSIQQSFARISLGPVEGIAHISQVMDEHVIFDPQRRAFIGERTRRIVEVGDIVRTRVISVSMPSEPIGRPR
IQLTMRQPYLGKTEWHKRKRIEAK

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG1095

COG function: function code K; DNA-directed RNA polymerase, subunit E'

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI24475814, Length=181, Percent_Identity=24.3093922651934, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI65301161, Length=181, Percent_Identity=24.3093922651934, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322705, Length=150, Percent_Identity=28, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR005576
- InterPro:   IPR004519 [H]

Pfam domain/function: PF03876 RNA_pol_Rpb7_N; PF00575 S1 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 20844; Mature: 20844

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAIYRVRDVVRIPPSLFGMSLEEAALKVLTEKYVGYVHPEMGVIVAIFDVKVSEEGRVI
CCCHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEE
PGDGATYHDSEYSVLAFKPIVKEVVEGVVVSIQQSFARISLGPVEGIAHISQVMDEHVIF
CCCCCEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEE
DPQRRAFIGERTRRIVEVGDIVRTRVISVSMPSEPIGRPRIQLTMRQPYLGKTEWHKRKR
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHC
IEAK
CCCC
>Mature Secondary Structure
MYAIYRVRDVVRIPPSLFGMSLEEAALKVLTEKYVGYVHPEMGVIVAIFDVKVSEEGRVI
CCCHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEE
PGDGATYHDSEYSVLAFKPIVKEVVEGVVVSIQQSFARISLGPVEGIAHISQVMDEHVIF
CCCCCEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEE
DPQRRAFIGERTRRIVEVGDIVRTRVISVSMPSEPIGRPRIQLTMRQPYLGKTEWHKRKR
CCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHC
IEAK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8127719 [H]