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The map label for this gene is ydcR [C]

Identifier: 124027306

GI number: 124027306

Start: 403715

End: 404920

Strand: Reverse

Name: ydcR [C]

Synonym: Hbut_0415

Alternate gene names: 124027306

Gene position: 404920-403715 (Counterclockwise)

Preceding gene: 124027308

Following gene: 124027304

Centisome position: 24.29

GC content: 49.25

Gene sequence:

>1206_bases
ATGATCGATTATGACAGGTTCCTCTCCGATTATGCAAAGAGTGTCAGGGCTTCAGACATACGCGAACTCCTTAAAGTAGT
AGAGCGTGGTGGTGTTATAAGCTTCGCTGGTGGCCTACCTGACCCCAATACCTTCCCCAAAGAGGAGATAGCACAGATAG
CAATGGAGGTAATAATCAAGCATGGAGAGAAGGCGCTACAGTACGGTCCCACCAGGGGCTCAGCATACTTCCTAGAAGCT
GTTAGAGAGTTCTCTAAGATGAATGGCATACCTGTGAGAGAGAATGAGGGGATAATAGCCACTGTTGGTAGCCAGCAATC
CCTATACCTTGTTGGCAAGACACTTGCAAACCCTGGAGATTACATTGTAACCGAGGAACCAACATACCTTGGCGCCATCC
AGGCCTTCCGGAGCAGTGGTGTACGCTTCCTCACCGTGCCAATAGACGAGGATGGTATGAGAACCGATAAGTTGGAAGAG
GTGCTCAAGGAGGCGGTAAGCGAGGGCATAAAAATCAAGTACATATACACTATTCCGACATGTCACAATCCTGCAGGAAC
AACGATGCCCATGGAGAGGCGAAAGCACCTCCTCGAGCTAGCAGAGCAGTACAACATACTAGTGATAGAGGATGACCCAT
ACAGCTACATAACCTTTGAGGAACGCGAGGTAAAGCCGCTAAAAGCTATGGACGAGTCTGGCAGGGTCATCTATCTGAGC
ACCCTCAGCAAGATACTAGCTCCAGGCATAAGGCTTGGCTGGGCCATAGGCCCAGAGCCAATAGTAGCCAAGATGGAGCT
TGTAAAGCAGGGCATGGACCTACATACACCCACGCTAACCCAGTACATTGCCGCCGAGATACTAAAGCGGGGCATCATAG
ACAGAAACATACCGAAGATAAAGAGGATCTACAAGGAGAAGCGTGATGCAATGTTGAGGGCACTTGAGCAGTACATGCCT
GAAGGCGTTAAGTGGACCAAGCCTATAGGTGGCCTCTTCATCTGGGTATGGCTGCCAGAGAAGATTAATGCTAGGAAGCT
GCTAAATAAGGCGATAGAGAATGGTGTAGTATTCGTGCCTGGAGACTCATTCTTCCCCAACGGCGGCGGCAAGAACACAA
TGAGGCTAAACTTCAGCTATCCATCGCCGGAAGAGATAGAAGAGGGTATTAAGAGACTAGCAAAGACCATAAAGGAGATG
CTCTAG

Upstream 100 bases:

>100_bases
GTTGGGATATTTCTAGTAGGTTCTGCTAATATGCGAAGTGTATGGCTACGTAATCCATATTACCTTTTATTCCGCAACCC
AAAATAATGGCTGGTGTATA

Downstream 100 bases:

>100_bases
CCGAGCCTATACACTAGACCCAGCCATGGAGCTGTCTCCGGTGGTTTTTCCAAGCCCTCAACCACTCTCACGTATTCCCC
TACGAGCCTCCAAACCCTAT

Product: transcriptional regulator

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MIDYDRFLSDYAKSVRASDIRELLKVVERGGVISFAGGLPDPNTFPKEEIAQIAMEVIIKHGEKALQYGPTRGSAYFLEA
VREFSKMNGIPVRENEGIIATVGSQQSLYLVGKTLANPGDYIVTEEPTYLGAIQAFRSSGVRFLTVPIDEDGMRTDKLEE
VLKEAVSEGIKIKYIYTIPTCHNPAGTTMPMERRKHLLELAEQYNILVIEDDPYSYITFEEREVKPLKAMDESGRVIYLS
TLSKILAPGIRLGWAIGPEPIVAKMELVKQGMDLHTPTLTQYIAAEILKRGIIDRNIPKIKRIYKEKRDAMLRALEQYMP
EGVKWTKPIGGLFIWVWLPEKINARKLLNKAIENGVVFVPGDSFFPNGGGKNTMRLNFSYPSPEEIEEGIKRLAKTIKEM
L

Sequences:

>Translated_401_residues
MIDYDRFLSDYAKSVRASDIRELLKVVERGGVISFAGGLPDPNTFPKEEIAQIAMEVIIKHGEKALQYGPTRGSAYFLEA
VREFSKMNGIPVRENEGIIATVGSQQSLYLVGKTLANPGDYIVTEEPTYLGAIQAFRSSGVRFLTVPIDEDGMRTDKLEE
VLKEAVSEGIKIKYIYTIPTCHNPAGTTMPMERRKHLLELAEQYNILVIEDDPYSYITFEEREVKPLKAMDESGRVIYLS
TLSKILAPGIRLGWAIGPEPIVAKMELVKQGMDLHTPTLTQYIAAEILKRGIIDRNIPKIKRIYKEKRDAMLRALEQYMP
EGVKWTKPIGGLFIWVWLPEKINARKLLNKAIENGVVFVPGDSFFPNGGGKNTMRLNFSYPSPEEIEEGIKRLAKTIKEM
L
>Mature_401_residues
MIDYDRFLSDYAKSVRASDIRELLKVVERGGVISFAGGLPDPNTFPKEEIAQIAMEVIIKHGEKALQYGPTRGSAYFLEA
VREFSKMNGIPVRENEGIIATVGSQQSLYLVGKTLANPGDYIVTEEPTYLGAIQAFRSSGVRFLTVPIDEDGMRTDKLEE
VLKEAVSEGIKIKYIYTIPTCHNPAGTTMPMERRKHLLELAEQYNILVIEDDPYSYITFEEREVKPLKAMDESGRVIYLS
TLSKILAPGIRLGWAIGPEPIVAKMELVKQGMDLHTPTLTQYIAAEILKRGIIDRNIPKIKRIYKEKRDAMLRALEQYMP
EGVKWTKPIGGLFIWVWLPEKINARKLLNKAIENGVVFVPGDSFFPNGGGKNTMRLNFSYPSPEEIEEGIKRLAKTIKEM
L

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=425, Percent_Identity=31.5294117647059, Blast_Score=231, Evalue=6e-61,
Organism=Homo sapiens, GI33469970, Length=425, Percent_Identity=31.5294117647059, Blast_Score=231, Evalue=6e-61,
Organism=Homo sapiens, GI56713256, Length=331, Percent_Identity=26.8882175226586, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI56713254, Length=331, Percent_Identity=26.8882175226586, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI95147551, Length=330, Percent_Identity=22.7272727272727, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI169881279, Length=330, Percent_Identity=22.7272727272727, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI187936925, Length=329, Percent_Identity=26.4437689969605, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI14211921, Length=329, Percent_Identity=26.4437689969605, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1787710, Length=383, Percent_Identity=27.6762402088773, Blast_Score=168, Evalue=6e-43,
Organism=Escherichia coli, GI1790797, Length=380, Percent_Identity=26.3157894736842, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI48994949, Length=228, Percent_Identity=28.9473684210526, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788722, Length=357, Percent_Identity=24.6498599439776, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1786816, Length=367, Percent_Identity=22.0708446866485, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17567369, Length=280, Percent_Identity=24.2857142857143, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994476, Length=284, Percent_Identity=22.887323943662, Blast_Score=68, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71994472, Length=284, Percent_Identity=22.887323943662, Blast_Score=68, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6321236, Length=489, Percent_Identity=26.7893660531697, Blast_Score=159, Evalue=8e-40,
Organism=Saccharomyces cerevisiae, GI6321000, Length=434, Percent_Identity=25.5760368663594, Blast_Score=117, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6321929, Length=490, Percent_Identity=25.5102040816327, Blast_Score=105, Evalue=9e-24,
Organism=Drosophila melanogaster, GI21356535, Length=356, Percent_Identity=29.2134831460674, Blast_Score=151, Evalue=7e-37,
Organism=Drosophila melanogaster, GI28573069, Length=333, Percent_Identity=24.3243243243243, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646114, Length=333, Percent_Identity=24.3243243243243, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573067, Length=333, Percent_Identity=24.3243243243243, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573065, Length=333, Percent_Identity=24.3243243243243, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 45202; Mature: 45202

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDYDRFLSDYAKSVRASDIRELLKVVERGGVISFAGGLPDPNTFPKEEIAQIAMEVIIK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
HGEKALQYGPTRGSAYFLEAVREFSKMNGIPVRENEGIIATVGSQQSLYLVGKTLANPGD
CCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEECCCCEEEEECCCCEEEEEEHHHCCCCC
YIVTEEPTYLGAIQAFRSSGVRFLTVPIDEDGMRTDKLEEVLKEAVSEGIKIKYIYTIPT
EEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
CHNPAGTTMPMERRKHLLELAEQYNILVIEDDPYSYITFEEREVKPLKAMDESGRVIYLS
CCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCHHHHCCCCCCEEEHH
TLSKILAPGIRLGWAIGPEPIVAKMELVKQGMDLHTPTLTQYIAAEILKRGIIDRNIPKI
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
KRIYKEKRDAMLRALEQYMPEGVKWTKPIGGLFIWVWLPEKINARKLLNKAIENGVVFVP
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEC
GDSFFPNGGGKNTMRLNFSYPSPEEIEEGIKRLAKTIKEML
CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MIDYDRFLSDYAKSVRASDIRELLKVVERGGVISFAGGLPDPNTFPKEEIAQIAMEVIIK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHH
HGEKALQYGPTRGSAYFLEAVREFSKMNGIPVRENEGIIATVGSQQSLYLVGKTLANPGD
CCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEECCCCEEEEECCCCEEEEEEHHHCCCCC
YIVTEEPTYLGAIQAFRSSGVRFLTVPIDEDGMRTDKLEEVLKEAVSEGIKIKYIYTIPT
EEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
CHNPAGTTMPMERRKHLLELAEQYNILVIEDDPYSYITFEEREVKPLKAMDESGRVIYLS
CCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCCCCHHHHCCCCCCEEEHH
TLSKILAPGIRLGWAIGPEPIVAKMELVKQGMDLHTPTLTQYIAAEILKRGIIDRNIPKI
HHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
KRIYKEKRDAMLRALEQYMPEGVKWTKPIGGLFIWVWLPEKINARKLLNKAIENGVVFVP
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEC
GDSFFPNGGGKNTMRLNFSYPSPEEIEEGIKRLAKTIKEML
CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]