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The map label for this gene is rnz [C]

Identifier: 124027120

GI number: 124027120

Start: 209763

End: 210500

Strand: Direct

Name: rnz [C]

Synonym: Hbut_0223

Alternate gene names: 124027120

Gene position: 209763-210500 (Clockwise)

Preceding gene: 124027117

Following gene: 124027121

Centisome position: 12.58

GC content: 59.89

Gene sequence:

>738_bases
ATGATCTGGTTCATCGGTACTGCGGGCGCCGGAGGGGTTCCGGGCCGAGCTAAGAACTGTATCCTGGTTGACACGGGGGA
TGCTAGGCTCCTCCTCGATGTTGGGCCGGGCTGCGTGGAGAGGCTCTACGAGCTGGGCTACAGCGCCTGTGACGTGGACT
ACATCTACATAAGTCACCTCCACATGGACCATTGGAGCGGCTTGTTCGATTACGCTGTCCGCTACAGTGTGGAGGGCTGC
AGCCAGCCTCCAACGCTGCTAGCGGGGGAGAAGGTGAGGGATCAGTTGTCATCAGTCATAGAGACGCTGCCTGGCAGGCT
ACGCGGCGAGGTGGGAGCCCGCAGCATACCAGCCAGCGGGGGCCTAGAGCTTGACGGGATGCTGATCCGGGTCTACGAGG
CCGTGCATACACTCCCAGCCTACACTGTTGAAGTAATTGTTGACGGGTCGACGCTTGTCTACAGTGGCGATACAGGGCCA
ACGGGGAAACTCCGAGAACTAGCATCGAGGACTGATCTCCTCGTGGTTGAGGCCTCTATGCCTCGAGGGATGGAGGTCAA
GGCAAGGGAGACCGGGCACCACACTGTGGATGAGGCAGCAGCATACCGCGACCAGATGAGGAGCGAAGCACTACTAGTGC
TAACACACCTCACCAGAGAAAGCCTCGAAGACATAAGGCGGCATGGGCTCCCACGCAGAGTCATAGCCGCCTCCGACGGG
CTCGTCCTCAGCATCTAG

Upstream 100 bases:

>100_bases
TTTACTACACTATCGAGGGTCTGTATCGCCAGCGTTCATCCATATATTCTCCTCCTCACCGTTGCCCTCTCGGCTTATCC
TCGCTGGGTGGTCTCAGTTG

Downstream 100 bases:

>100_bases
TGCGAGCCTAGCGTAAACACCATACGGAAGCCGTTCCAGTCCACTGCAGCTAGAGCCGAGACAATCATTCGTTGTATGTG
TCCTTGGATTTCTGTGTCAC

Product: ribonuclease Z

Products: NA

Alternate protein names: Beta-Lactamase Domain Protein; Beta-Lactamase-Like Protein; Metal Dependent Hydrolase; RNAse Z; Ribonuclease Z; Metal-Dependent Hydrolase Of Beta-Lactamase Superfamily III; Arylsulfatase

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MIWFIGTAGAGGVPGRAKNCILVDTGDARLLLDVGPGCVERLYELGYSACDVDYIYISHLHMDHWSGLFDYAVRYSVEGC
SQPPTLLAGEKVRDQLSSVIETLPGRLRGEVGARSIPASGGLELDGMLIRVYEAVHTLPAYTVEVIVDGSTLVYSGDTGP
TGKLRELASRTDLLVVEASMPRGMEVKARETGHHTVDEAAAYRDQMRSEALLVLTHLTRESLEDIRRHGLPRRVIAASDG
LVLSI

Sequences:

>Translated_245_residues
MIWFIGTAGAGGVPGRAKNCILVDTGDARLLLDVGPGCVERLYELGYSACDVDYIYISHLHMDHWSGLFDYAVRYSVEGC
SQPPTLLAGEKVRDQLSSVIETLPGRLRGEVGARSIPASGGLELDGMLIRVYEAVHTLPAYTVEVIVDGSTLVYSGDTGP
TGKLRELASRTDLLVVEASMPRGMEVKARETGHHTVDEAAAYRDQMRSEALLVLTHLTRESLEDIRRHGLPRRVIAASDG
LVLSI
>Mature_245_residues
MIWFIGTAGAGGVPGRAKNCILVDTGDARLLLDVGPGCVERLYELGYSACDVDYIYISHLHMDHWSGLFDYAVRYSVEGC
SQPPTLLAGEKVRDQLSSVIETLPGRLRGEVGARSIPASGGLELDGMLIRVYEAVHTLPAYTVEVIVDGSTLVYSGDTGP
TGKLRELASRTDLLVVEASMPRGMEVKARETGHHTVDEAAAYRDQMRSEALLVLTHLTRESLEDIRRHGLPRRVIAASDG
LVLSI

Specific function: Zinc Phosphodiesterase, Which Displays Some Trna 3'- Processing Endonuclease Activity. Probably Involved In Trna Maturation, By Removing A 3'Trailer From Precursor Trna. [C]

COG id: COG1234

COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.26.11 [C]

Molecular weight: Translated: 26590; Mature: 26590

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWFIGTAGAGGVPGRAKNCILVDTGDARLLLDVGPGCVERLYELGYSACDVDYIYISHL
CEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCEEEEEEEEE
HMDHWSGLFDYAVRYSVEGCSQPPTLLAGEKVRDQLSSVIETLPGRLRGEVGARSIPASG
EHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCC
GLELDGMLIRVYEAVHTLPAYTVEVIVDGSTLVYSGDTGPTGKLRELASRTDLLVVEASM
CCCCCHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCHHHHHHHCCCCEEEEEECC
PRGMEVKARETGHHTVDEAAAYRDQMRSEALLVLTHLTRESLEDIRRHGLPRRVIAASDG
CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
LVLSI
EEEEC
>Mature Secondary Structure
MIWFIGTAGAGGVPGRAKNCILVDTGDARLLLDVGPGCVERLYELGYSACDVDYIYISHL
CEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCHHHHHHHHCCCCCCCEEEEEEEEE
HMDHWSGLFDYAVRYSVEGCSQPPTLLAGEKVRDQLSSVIETLPGRLRGEVGARSIPASG
EHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCC
GLELDGMLIRVYEAVHTLPAYTVEVIVDGSTLVYSGDTGPTGKLRELASRTDLLVVEASM
CCCCCHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCCCHHHHHHHCCCCEEEEEECC
PRGMEVKARETGHHTVDEAAAYRDQMRSEALLVLTHLTRESLEDIRRHGLPRRVIAASDG
CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
LVLSI
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA