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The map label for this gene is srp19

Identifier: 124027006

GI number: 124027006

Start: 95711

End: 96022

Strand: Direct

Name: srp19

Synonym: Hbut_0106

Alternate gene names: 124027006

Gene position: 95711-96022 (Clockwise)

Preceding gene: 124027005

Following gene: 124027013

Centisome position: 5.74

GC content: 49.36

Gene sequence:

>312_bases
TTGAGTAAAGAGTATCGGGGCAGGAGGATTGTGCTCTGGCCAGCAAATATTGACTCTACGCTTTCTAGGTCTGAGGGCAG
GAAGATACCATTGAGAGATGCTGTTAGGAAGCCAAGGGTTGAGGAAATAGTTGAGGCTGCCAATAGGCTGGGCCTAAACC
CAACAGTTGAGGAGGCAGCTTATCCCCGTAGCTGGTGGGAGCAGCGTAAAAGAGTGGTTGTGGATAAGGTTGGCTCCAAG
CTTAACACTTTACGTATGATAGCTCAAGAGGTAAAGAAGCTTAGGGAGGAGAGGAGGAGGCTAGGTAAGTAG

Upstream 100 bases:

>100_bases
CTAAAGTTGAGACGCCTGGGGCGGTGAGGAAGGATTATCGGGCCGAGTGGTGTGGAAGGTACCCTCAGGCTGAGCCCCTA
CAATAGTGAGGTGCTGGGGT

Downstream 100 bases:

>100_bases
AGGCGTATTCTATAGCGTTAACTGTTTCAGGTTTCTCGCCAGTAAACTCGCCATCAAGGTAGACAAGCGTGCCTCCCACG
ATTACTGCCTTCAGTGCAGC

Product: signal recognition particle protein Srp19

Products: NA

Alternate protein names: SRP19

Number of amino acids: Translated: 103; Mature: 102

Protein sequence:

>103_residues
MSKEYRGRRIVLWPANIDSTLSRSEGRKIPLRDAVRKPRVEEIVEAANRLGLNPTVEEAAYPRSWWEQRKRVVVDKVGSK
LNTLRMIAQEVKKLREERRRLGK

Sequences:

>Translated_103_residues
MSKEYRGRRIVLWPANIDSTLSRSEGRKIPLRDAVRKPRVEEIVEAANRLGLNPTVEEAAYPRSWWEQRKRVVVDKVGSK
LNTLRMIAQEVKKLREERRRLGK
>Mature_102_residues
SKEYRGRRIVLWPANIDSTLSRSEGRKIPLRDAVRKPRVEEIVEAANRLGLNPTVEEAAYPRSWWEQRKRVVVDKVGSKL
NTLRMIAQEVKKLREERRRLGK

Specific function: Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP

COG id: COG1400

COG function: function code U; Signal recognition particle 19 kDa protein

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SRP19 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SRP19_HYPBU (A2BJ20)

Other databases:

- EMBL:   CP000493
- RefSeq:   YP_001012326.1
- ProteinModelPortal:   A2BJ20
- SMR:   A2BJ20
- STRING:   A2BJ20
- GeneID:   4782177
- GenomeReviews:   CP000493_GR
- KEGG:   hbu:Hbut_0106
- eggNOG:   arNOG12644
- HOGENOM:   HBG629394
- OMA:   IWPAYID
- ProtClustDB:   PRK00754
- BioCyc:   HBUT415426:HBUT_0106-MONOMER
- HAMAP:   MF_00305
- InterPro:   IPR002778
- InterPro:   IPR022938
- Gene3D:   G3DSA:3.30.56.30
- PANTHER:   PTHR17453

Pfam domain/function: PF01922 SRP19; SSF69695 Signal_recog_particle_SRP19

EC number: NA

Molecular weight: Translated: 12122; Mature: 11991

Theoretical pI: Translated: 11.50; Mature: 11.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEYRGRRIVLWPANIDSTLSRSEGRKIPLRDAVRKPRVEEIVEAANRLGLNPTVEEAA
CCCCCCCCEEEEECCCCCHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHC
YPRSWWEQRKRVVVDKVGSKLNTLRMIAQEVKKLREERRRLGK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKEYRGRRIVLWPANIDSTLSRSEGRKIPLRDAVRKPRVEEIVEAANRLGLNPTVEEAA
CCCCCCCEEEEECCCCCHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHC
YPRSWWEQRKRVVVDKVGSKLNTLRMIAQEVKKLREERRRLGK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA