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The map label for this gene is lysS [H]

Identifier: 124026958

GI number: 124026958

Start: 44860

End: 46557

Strand: Direct

Name: lysS [H]

Synonym: Hbut_0055

Alternate gene names: 124026958

Gene position: 44860-46557 (Clockwise)

Preceding gene: 124026957

Following gene: 124026959

Centisome position: 2.69

GC content: 55.54

Gene sequence:

>1698_bases
TTGGCCGTGGAGTTTGTACAAGACGTTAGGCAGGCTAGGTTTCTCCGTGAACCAGTAGTCGAATCCCGGGGCGAGCTAAA
GCATTGGATTGACGCGTTGGCCGACTGGCTAGAGGAGAGACTACGGGCCCGTGGCAAGGAGGTCTACGTCTTCAATGGAG
GATTGTCTGTGTCCGGTCTTCAGCACGTTGGTAGGCTGAGGGGCGAAGTGATTATACTAGAGACACTGCGCCGCATACTC
TCCCAAAGAGGGCTTAGGATAAAGCAGTACCTCACTCTCTACACACAGGATGCGTGGAAGGGCAAGGATAGTCAACTCAA
AGCGTTCCCCAACCCCGAGGAGGCCCGCCGGTACACCGGCTGGCCCCTCATAAGGGTACCTGACCCTAAGGGCGAGCTTA
GGAGTTGGGTTGACAGGTTCTGGCTTGACTTTGGTCCCTACATACCAGAGTTTACTGACGGCCAAGTGGAGGTTGTAACT
ACGACCGAACTCTACCGTGGTAAGCTGCTGGAGTTCGTGAAGATGTCTGTGGAGAGGCGTGAGGAGGTACGACGAGTCAT
AAACAGGTACCGTGGTAGAAAGCCGTATCCAGAAGGCTGGATACCATTTGAAGCAATATGCGCTAGGTGTGGCAGGATAG
ACAGTACCGAGGCTCTCGAGGTCGATCTTGAGAGGGAGATGGTACGATATCGCTGTAAGCAGTGTGGTCACGAGGGCTGG
GCCAAGCTCTGGGATGGGAAGTTAAACTGGAGGATAGAGTGGGTTGGCGTGTGGTGGGCGCTAGGAGTAGACTTTGAGCC
TTACGGAAAAGACCATGCTACACCCGGCGGCAGCAGGGATAGTGCCAATGAGCTAGCTCGCTTAGTCTACGGCATCGAGC
CGCCAGAGGGGCTCCCCTATGAGTGGGTTGCCGTGAAGACCCCGGATGGAGAGGCTGATATGAGCAGTAGTGACTTTATA
GGATTTACGCCCCGTGAGTGGCTAGAAGTGGCTCACCCGGAGGTCCTAAGGTTCCTCATGCTGAAGACCCCACCCATGAG
GAAGATATCTCTTGGCCTCCACGAGGTGCCACAGTATTACGAACAGTACTACAAGGCTGAACGTGTATACTATGGTGTTG
AGACGGCGGGATCTCGTGAGGAGGACATAGTGCTACGTAGGAGCTACGAGCTAAGCTATACCAGGGCGGGGCCGCCCGAG
AAAATGCCTGCCCAGCCACCCTACACACACGTAGCGATTCTTGCGCAGATACTGCCAGAAAACTTGTGGCGCAGCGAGGC
TGTAAAGAGGCTGCAAAGGAGTGGTCACATGCCAGACAATCCGACGAGCTTCGATATAGAGAGGCTCATGGCCCTACTGC
CCCGCGCTAAGAGATGGGCTGAGCGTTACGCCCCCAGCCACATAAGGGTTAAGATACTCGAGGAGTTGCCAGACGATGTC
AGGAGTCGTGTACCAGACTGGGCGCGTAAAGCGCTACGCGAGCTAGGTGAGAAGCTTGCAGTGCTCGAGGAGTGGAGCGA
GGACGCCATCAAGAACGTGATGATCGAGTTTACACGTGGCTGGGAGCCAGCAAAGAGGAGGGAGTTCTACCGCTACTTCT
ACCTAGTCTTCGTCGGCCGCGAGAGTGGGCCGAGAGCGGCTCCACTACTAGCACTGCTGGATCGCGAGTTTGTCGTCAGC
AGGCTCTCAAGCATATAA

Upstream 100 bases:

>100_bases
CCCTTCCAGCACAGTAGCTTGGACACTACTCAAGCCTCCGGTAGCTAGGTTTTTCCCTCCTCCAGGCCCCCAGGCCCTGT
TACCGGGTGTGTTCTAGCCC

Downstream 100 bases:

>100_bases
CATGTCTTTCACGGGCGTTAAACATTTTTATAGACTCTGGTGTATATTCTCTTGCGGGCTGGTAAGTGTGAGTGCGCCTC
TAACACTTGCAGTCTGTGGG

Product: lysyl-tRNA synthetase

Products: NA

Alternate protein names: Lysine--tRNA ligase; LysRS [H]

Number of amino acids: Translated: 565; Mature: 564

Protein sequence:

>565_residues
MAVEFVQDVRQARFLREPVVESRGELKHWIDALADWLEERLRARGKEVYVFNGGLSVSGLQHVGRLRGEVIILETLRRIL
SQRGLRIKQYLTLYTQDAWKGKDSQLKAFPNPEEARRYTGWPLIRVPDPKGELRSWVDRFWLDFGPYIPEFTDGQVEVVT
TTELYRGKLLEFVKMSVERREEVRRVINRYRGRKPYPEGWIPFEAICARCGRIDSTEALEVDLEREMVRYRCKQCGHEGW
AKLWDGKLNWRIEWVGVWWALGVDFEPYGKDHATPGGSRDSANELARLVYGIEPPEGLPYEWVAVKTPDGEADMSSSDFI
GFTPREWLEVAHPEVLRFLMLKTPPMRKISLGLHEVPQYYEQYYKAERVYYGVETAGSREEDIVLRRSYELSYTRAGPPE
KMPAQPPYTHVAILAQILPENLWRSEAVKRLQRSGHMPDNPTSFDIERLMALLPRAKRWAERYAPSHIRVKILEELPDDV
RSRVPDWARKALRELGEKLAVLEEWSEDAIKNVMIEFTRGWEPAKRREFYRYFYLVFVGRESGPRAAPLLALLDREFVVS
RLSSI

Sequences:

>Translated_565_residues
MAVEFVQDVRQARFLREPVVESRGELKHWIDALADWLEERLRARGKEVYVFNGGLSVSGLQHVGRLRGEVIILETLRRIL
SQRGLRIKQYLTLYTQDAWKGKDSQLKAFPNPEEARRYTGWPLIRVPDPKGELRSWVDRFWLDFGPYIPEFTDGQVEVVT
TTELYRGKLLEFVKMSVERREEVRRVINRYRGRKPYPEGWIPFEAICARCGRIDSTEALEVDLEREMVRYRCKQCGHEGW
AKLWDGKLNWRIEWVGVWWALGVDFEPYGKDHATPGGSRDSANELARLVYGIEPPEGLPYEWVAVKTPDGEADMSSSDFI
GFTPREWLEVAHPEVLRFLMLKTPPMRKISLGLHEVPQYYEQYYKAERVYYGVETAGSREEDIVLRRSYELSYTRAGPPE
KMPAQPPYTHVAILAQILPENLWRSEAVKRLQRSGHMPDNPTSFDIERLMALLPRAKRWAERYAPSHIRVKILEELPDDV
RSRVPDWARKALRELGEKLAVLEEWSEDAIKNVMIEFTRGWEPAKRREFYRYFYLVFVGRESGPRAAPLLALLDREFVVS
RLSSI
>Mature_564_residues
AVEFVQDVRQARFLREPVVESRGELKHWIDALADWLEERLRARGKEVYVFNGGLSVSGLQHVGRLRGEVIILETLRRILS
QRGLRIKQYLTLYTQDAWKGKDSQLKAFPNPEEARRYTGWPLIRVPDPKGELRSWVDRFWLDFGPYIPEFTDGQVEVVTT
TELYRGKLLEFVKMSVERREEVRRVINRYRGRKPYPEGWIPFEAICARCGRIDSTEALEVDLEREMVRYRCKQCGHEGWA
KLWDGKLNWRIEWVGVWWALGVDFEPYGKDHATPGGSRDSANELARLVYGIEPPEGLPYEWVAVKTPDGEADMSSSDFIG
FTPREWLEVAHPEVLRFLMLKTPPMRKISLGLHEVPQYYEQYYKAERVYYGVETAGSREEDIVLRRSYELSYTRAGPPEK
MPAQPPYTHVAILAQILPENLWRSEAVKRLQRSGHMPDNPTSFDIERLMALLPRAKRWAERYAPSHIRVKILEELPDDVR
SRVPDWARKALRELGEKLAVLEEWSEDAIKNVMIEFTRGWEPAKRREFYRYFYLVFVGRESGPRAAPLLALLDREFVVSR
LSSI

Specific function: Unknown

COG id: COG1384

COG function: function code J; Lysyl-tRNA synthetase (class I)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008925
- InterPro:   IPR020751
- InterPro:   IPR002904
- InterPro:   IPR020754
- InterPro:   IPR020756
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01921 tRNA-synt_1f [H]

EC number: =6.1.1.6 [H]

Molecular weight: Translated: 66087; Mature: 65956

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVEFVQDVRQARFLREPVVESRGELKHWIDALADWLEERLRARGKEVYVFNGGLSVSGL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
QHVGRLRGEVIILETLRRILSQRGLRIKQYLTLYTQDAWKGKDSQLKAFPNPEEARRYTG
HHHHHHCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCC
WPLIRVPDPKGELRSWVDRFWLDFGPYIPEFTDGQVEVVTTTELYRGKLLEFVKMSVERR
CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH
EEVRRVINRYRGRKPYPEGWIPFEAICARCGRIDSTEALEVDLEREMVRYRCKQCGHEGW
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH
AKLWDGKLNWRIEWVGVWWALGVDFEPYGKDHATPGGSRDSANELARLVYGIEPPEGLPY
HHHCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCE
EWVAVKTPDGEADMSSSDFIGFTPREWLEVAHPEVLRFLMLKTPPMRKISLGLHEVPQYY
EEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCHHHHCCHHHHHHHH
EQYYKAERVYYGVETAGSREEDIVLRRSYELSYTRAGPPEKMPAQPPYTHVAILAQILPE
HHHHHHHHHEEECCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
NLWRSEAVKRLQRSGHMPDNPTSFDIERLMALLPRAKRWAERYAPSHIRVKILEELPDDV
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHH
RSRVPDWARKALRELGEKLAVLEEWSEDAIKNVMIEFTRGWEPAKRREFYRYFYLVFVGR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEC
ESGPRAAPLLALLDREFVVSRLSSI
CCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVEFVQDVRQARFLREPVVESRGELKHWIDALADWLEERLRARGKEVYVFNGGLSVSGL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
QHVGRLRGEVIILETLRRILSQRGLRIKQYLTLYTQDAWKGKDSQLKAFPNPEEARRYTG
HHHHHHCCCEEHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCC
WPLIRVPDPKGELRSWVDRFWLDFGPYIPEFTDGQVEVVTTTELYRGKLLEFVKMSVERR
CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHH
EEVRRVINRYRGRKPYPEGWIPFEAICARCGRIDSTEALEVDLEREMVRYRCKQCGHEGW
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHH
AKLWDGKLNWRIEWVGVWWALGVDFEPYGKDHATPGGSRDSANELARLVYGIEPPEGLPY
HHHCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCE
EWVAVKTPDGEADMSSSDFIGFTPREWLEVAHPEVLRFLMLKTPPMRKISLGLHEVPQYY
EEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCHHHHCCHHHHHHHH
EQYYKAERVYYGVETAGSREEDIVLRRSYELSYTRAGPPEKMPAQPPYTHVAILAQILPE
HHHHHHHHHEEECCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
NLWRSEAVKRLQRSGHMPDNPTSFDIERLMALLPRAKRWAERYAPSHIRVKILEELPDDV
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHH
RSRVPDWARKALRELGEKLAVLEEWSEDAIKNVMIEFTRGWEPAKRREFYRYFYLVFVGR
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEEC
ESGPRAAPLLALLDREFVVSRLSSI
CCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10382966 [H]