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The map label for this gene is secY [H]

Identifier: 124026690

GI number: 124026690

Start: 1637505

End: 1638824

Strand: Reverse

Name: secY [H]

Synonym: NATL1_19851

Alternate gene names: 124026690

Gene position: 1638824-1637505 (Counterclockwise)

Preceding gene: 124026691

Following gene: 124026689

Centisome position: 87.89

GC content: 37.12

Gene sequence:

>1320_bases
ATGTTAATAAGTCGTGGTCGAAATCCAAGTGCAGGTGAAGTAATCACCCAGCTTTTTAGCAATGAGGAACTTAGGGGAAG
AGTATTTACGACCCTAGGTTTATTGCTAATTGTTAGATTAGGAATTTATATTCCTATGCCTGGAATAGATAGAGAGGCTT
TTAAAAATTTTATTGATCAGGGAGGACAATTGATTGGATTTCTTGATATTTTTACAGGCGGTGGAATCTCAACTTTAGGA
GTTTTTGCACTAGGTATTCTTCCATTTATTAATGCGTCAATAATTATTCAATTGCTTACTGCCTCTTTACCTCAATTGGA
AGATTTACAGAAAAATGAAGGAGAAGCAGGAAGAAGGAAGATTGCTCAAATCACTAGATACGTCGCTTTGGGATGGGGAT
TGGTTCAAAGCACAGTTTTCGCTTTGATTCTTCGACAGTATGCGATTGAAGGTATTAGCGAAAGTGAATTTGTTATTCAG
ACATCACTGGCATTAGTCACTGGATCGATGATAGTTATGTGGCTTAGTGAGATCATTACTGAAAAAGGTATAGGCCAAGG
CGCTTCATTAGTTATTTTTTTGAATATTGTTGCTACTTTGCCCAAGGCACTTAGTTCTACTATTGAAAAAGCTCAGACTG
GAGATCGAGCGGATGTTTTGGGGATAATCATTCTTTTGATAGTTTTTTTAATTACTATTGTTGGTATTATTTTTGTTCAA
GAAGGTGCTAGAAGAATTCCTATAGTAAGTGCAAAAAGCCAAATGGGTGGAGGAGCTCTTTTGCCAAGTAGGCAAAGTTA
TTTACCTCTAAAGTTAAATGCTGGTGGCGTTATGCCCATAATTTTTGCTTCTGCCTTAATATTTCTACCAATAACAATTG
CAAATTTCACTCAAAACCCTTTATTGATAAAGGCTGCGAGTTCACTTAATCCAGGCTCATCCAACCCATGGCCATATGCA
ATTACCTTTTTCGCATTAATTTTAGGTTTCGCTTACTTTTATGCTTCTCTAACAATTAATCCATTAGATATAGCCTCTAA
TTTAAAAAAGGGTGGTGTTGCAATTCCAGGCGTAAGACCAGGTGGTGCTACTTCTAATTACCTTTCAGGTGTTCAAAATC
GCCTTACTTTGCTTGGTGGATTATTTCTTGGTTCAGTTGCTATTGTCCCTGCTGCAGTAGAGAGAGCAACTAATGTTCAA
ACTTTTCAAGGGCTTGGGGCAACTTCACTATTGATCTTGGTAGGAGTGGCAATTGATACCTCTAAACAGATTCAGACTTA
TGTCATTTCTCAAAGATATGAAGGATTAGTACGTCAATAA

Upstream 100 bases:

>100_bases
AAATTGAAGAAGTCGGGGGCTCATGTGAGCTATATAACTAATTTCTTTATCTCGAAAATTTAGTTTTATACACTAGCCTC
CAATCAATTATCCTTGTTAA

Downstream 100 bases:

>100_bases
AGTTTTACTATGATTTTATTTAAATGAAAAAAAAATTACTATTTCTTGGCCCCCCTGGCGCGGGGAAAGGGACGCAAGCA
AATCTTTTTTGCAAAAAATA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MLISRGRNPSAGEVITQLFSNEELRGRVFTTLGLLLIVRLGIYIPMPGIDREAFKNFIDQGGQLIGFLDIFTGGGISTLG
VFALGILPFINASIIIQLLTASLPQLEDLQKNEGEAGRRKIAQITRYVALGWGLVQSTVFALILRQYAIEGISESEFVIQ
TSLALVTGSMIVMWLSEIITEKGIGQGASLVIFLNIVATLPKALSSTIEKAQTGDRADVLGIIILLIVFLITIVGIIFVQ
EGARRIPIVSAKSQMGGGALLPSRQSYLPLKLNAGGVMPIIFASALIFLPITIANFTQNPLLIKAASSLNPGSSNPWPYA
ITFFALILGFAYFYASLTINPLDIASNLKKGGVAIPGVRPGGATSNYLSGVQNRLTLLGGLFLGSVAIVPAAVERATNVQ
TFQGLGATSLLILVGVAIDTSKQIQTYVISQRYEGLVRQ

Sequences:

>Translated_439_residues
MLISRGRNPSAGEVITQLFSNEELRGRVFTTLGLLLIVRLGIYIPMPGIDREAFKNFIDQGGQLIGFLDIFTGGGISTLG
VFALGILPFINASIIIQLLTASLPQLEDLQKNEGEAGRRKIAQITRYVALGWGLVQSTVFALILRQYAIEGISESEFVIQ
TSLALVTGSMIVMWLSEIITEKGIGQGASLVIFLNIVATLPKALSSTIEKAQTGDRADVLGIIILLIVFLITIVGIIFVQ
EGARRIPIVSAKSQMGGGALLPSRQSYLPLKLNAGGVMPIIFASALIFLPITIANFTQNPLLIKAASSLNPGSSNPWPYA
ITFFALILGFAYFYASLTINPLDIASNLKKGGVAIPGVRPGGATSNYLSGVQNRLTLLGGLFLGSVAIVPAAVERATNVQ
TFQGLGATSLLILVGVAIDTSKQIQTYVISQRYEGLVRQ
>Mature_439_residues
MLISRGRNPSAGEVITQLFSNEELRGRVFTTLGLLLIVRLGIYIPMPGIDREAFKNFIDQGGQLIGFLDIFTGGGISTLG
VFALGILPFINASIIIQLLTASLPQLEDLQKNEGEAGRRKIAQITRYVALGWGLVQSTVFALILRQYAIEGISESEFVIQ
TSLALVTGSMIVMWLSEIITEKGIGQGASLVIFLNIVATLPKALSSTIEKAQTGDRADVLGIIILLIVFLITIVGIIFVQ
EGARRIPIVSAKSQMGGGALLPSRQSYLPLKLNAGGVMPIIFASALIFLPITIANFTQNPLLIKAASSLNPGSSNPWPYA
ITFFALILGFAYFYASLTINPLDIASNLKKGGVAIPGVRPGGATSNYLSGVQNRLTLLGGLFLGSVAIVPAAVERATNVQ
TFQGLGATSLLILVGVAIDTSKQIQTYVISQRYEGLVRQ

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=426, Percent_Identity=39.4366197183099, Blast_Score=251, Evalue=7e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 46804; Mature: 46804

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLISRGRNPSAGEVITQLFSNEELRGRVFTTLGLLLIVRLGIYIPMPGIDREAFKNFIDQ
CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
GGQLIGFLDIFTGGGISTLGVFALGILPFINASIIIQLLTASLPQLEDLQKNEGEAGRRK
CCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHH
IAQITRYVALGWGLVQSTVFALILRQYAIEGISESEFVIQTSLALVTGSMIVMWLSEIIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EKGIGQGASLVIFLNIVATLPKALSSTIEKAQTGDRADVLGIIILLIVFLITIVGIIFVQ
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EGARRIPIVSAKSQMGGGALLPSRQSYLPLKLNAGGVMPIIFASALIFLPITIANFTQNP
CCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC
LLIKAASSLNPGSSNPWPYAITFFALILGFAYFYASLTINPLDIASNLKKGGVAIPGVRP
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEECCCCCC
GGATSNYLSGVQNRLTLLGGLFLGSVAIVPAAVERATNVQTFQGLGATSLLILVGVAIDT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCCC
SKQIQTYVISQRYEGLVRQ
CHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLISRGRNPSAGEVITQLFSNEELRGRVFTTLGLLLIVRLGIYIPMPGIDREAFKNFIDQ
CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC
GGQLIGFLDIFTGGGISTLGVFALGILPFINASIIIQLLTASLPQLEDLQKNEGEAGRRK
CCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHH
IAQITRYVALGWGLVQSTVFALILRQYAIEGISESEFVIQTSLALVTGSMIVMWLSEIIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EKGIGQGASLVIFLNIVATLPKALSSTIEKAQTGDRADVLGIIILLIVFLITIVGIIFVQ
HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EGARRIPIVSAKSQMGGGALLPSRQSYLPLKLNAGGVMPIIFASALIFLPITIANFTQNP
CCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC
LLIKAASSLNPGSSNPWPYAITFFALILGFAYFYASLTINPLDIASNLKKGGVAIPGVRP
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEECCCCCC
GGATSNYLSGVQNRLTLLGGLFLGSVAIVPAAVERATNVQTFQGLGATSLLILVGVAIDT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHCCC
SKQIQTYVISQRYEGLVRQ
CHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1420358 [H]