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The map label for this gene is ykfC [H]

Identifier: 124026668

GI number: 124026668

Start: 1621137

End: 1621889

Strand: Reverse

Name: ykfC [H]

Synonym: NATL1_19631

Alternate gene names: 124026668

Gene position: 1621889-1621137 (Counterclockwise)

Preceding gene: 124026670

Following gene: 124026667

Centisome position: 86.98

GC content: 32.8

Gene sequence:

>753_bases
ATGACCTTAGAGGTTTTGCTAACTAAAGCTTCATTTGTTTTGGGAAGTTTATGGAAACTGCGAATAAATATTGATGGATT
TAAAAGTGAAAATAGTGATGAATTAGTTACACAAGCAAGTATTGGTAGGAGTTTTCAATTGATTGATTGTTTAAGATCTA
ATTTTAAAGATAAGGAAATTATCGATAGAGTTAAAGTGCGTCTTTTGGAAGATGACTATATTTGTTGGTTTAGATTTTCT
GAATTAATTCATCAAGCTTCCAAAATAGAATCATGGGAATCTGAATTGTTTACTGAAGAGAGAATTATTTCTAGGATTCC
TGAGATATTGTCTTGGACTAAGGCTGCAAAAAAAATTAGTAATGAATATTTGTGGGGTGGAACGATAGGTCCAAATTTTG
ATTGCTCTGGTTTGGTTCAATCTGCTTTTGCAAGTTCAGGCATTTGGATACCAAGAGATGCTTATCAGCAGGAAAAATTC
TGCAAAAATATTGCATTGGATATTGAAGCTTTAGGCAAAGATTTAAAACCTGGTGATTTACTTTTCTTTGGATCAACTGA
AAAATGTACCCACGTTGGATTACATATTGAGAATGGTTTTTATATTCATAGTTCTGGGGTAACTGATGGGCATAATGGAA
TAGAGATTGATGGTTTATTTCAACCGAACCTTGGGGAAATTGCTTCTTTTTACAGATCTAAATTTAGATCTGCTGGAAGA
GTGATCTCTTGTTATCAGAGTGAAAAACTCTAA

Upstream 100 bases:

>100_bases
GACGACCTTCTTTTTCAAATCTATCGAGTAGACCTTTCAGGCAATATGCCATCTCAGGGTCCTGTCGGTAGAACGCCATA
GCGCTCGAGAAGAATTCAAT

Downstream 100 bases:

>100_bases
AGAAGATTAATTGAACTTTATGAGGAGTTTTGAATGAATTCTAATGTTGAACTATCAATAGTTGTTCCTATCTATAACGA
AGAAGAAAGTCTTCCTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Cell wall endopeptidase ykfC [H]

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MTLEVLLTKASFVLGSLWKLRINIDGFKSENSDELVTQASIGRSFQLIDCLRSNFKDKEIIDRVKVRLLEDDYICWFRFS
ELIHQASKIESWESELFTEERIISRIPEILSWTKAAKKISNEYLWGGTIGPNFDCSGLVQSAFASSGIWIPRDAYQQEKF
CKNIALDIEALGKDLKPGDLLFFGSTEKCTHVGLHIENGFYIHSSGVTDGHNGIEIDGLFQPNLGEIASFYRSKFRSAGR
VISCYQSEKL

Sequences:

>Translated_250_residues
MTLEVLLTKASFVLGSLWKLRINIDGFKSENSDELVTQASIGRSFQLIDCLRSNFKDKEIIDRVKVRLLEDDYICWFRFS
ELIHQASKIESWESELFTEERIISRIPEILSWTKAAKKISNEYLWGGTIGPNFDCSGLVQSAFASSGIWIPRDAYQQEKF
CKNIALDIEALGKDLKPGDLLFFGSTEKCTHVGLHIENGFYIHSSGVTDGHNGIEIDGLFQPNLGEIASFYRSKFRSAGR
VISCYQSEKL
>Mature_249_residues
TLEVLLTKASFVLGSLWKLRINIDGFKSENSDELVTQASIGRSFQLIDCLRSNFKDKEIIDRVKVRLLEDDYICWFRFSE
LIHQASKIESWESELFTEERIISRIPEILSWTKAAKKISNEYLWGGTIGPNFDCSGLVQSAFASSGIWIPRDAYQQEKFC
KNIALDIEALGKDLKPGDLLFFGSTEKCTHVGLHIENGFYIHSSGVTDGHNGIEIDGLFQPNLGEIASFYRSKFRSAGRV
ISCYQSEKL

Specific function: Specifically hydrolyzes gamma-D-glutamyl-L-lysine bonds in murein peptides, releasing L-Ala-D-Glu [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 28351; Mature: 28219

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLEVLLTKASFVLGSLWKLRINIDGFKSENSDELVTQASIGRSFQLIDCLRSNFKDKEI
CCCEEEHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHH
IDRVKVRLLEDDYICWFRFSELIHQASKIESWESELFTEERIISRIPEILSWTKAAKKIS
HHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NEYLWGGTIGPNFDCSGLVQSAFASSGIWIPRDAYQQEKFCKNIALDIEALGKDLKPGDL
CCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LFFGSTEKCTHVGLHIENGFYIHSSGVTDGHNGIEIDGLFQPNLGEIASFYRSKFRSAGR
EEECCCCCCEEEEEEECCCEEEEECCCCCCCCCEEEECEECCCHHHHHHHHHHHHHHCCC
VISCYQSEKL
EEEHHCCCCC
>Mature Secondary Structure 
TLEVLLTKASFVLGSLWKLRINIDGFKSENSDELVTQASIGRSFQLIDCLRSNFKDKEI
CCEEEHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHH
IDRVKVRLLEDDYICWFRFSELIHQASKIESWESELFTEERIISRIPEILSWTKAAKKIS
HHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NEYLWGGTIGPNFDCSGLVQSAFASSGIWIPRDAYQQEKFCKNIALDIEALGKDLKPGDL
CCEEECCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LFFGSTEKCTHVGLHIENGFYIHSSGVTDGHNGIEIDGLFQPNLGEIASFYRSKFRSAGR
EEECCCCCCEEEEEEECCCEEEEECCCCCCCCCEEEECEECCCHHHHHHHHHHHHHHCCC
VISCYQSEKL
EEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]