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The map label for this gene is yocR [H]

Identifier: 124026296

GI number: 124026296

Start: 1299760

End: 1301085

Strand: Reverse

Name: yocR [H]

Synonym: NATL1_15901

Alternate gene names: 124026296

Gene position: 1301085-1299760 (Counterclockwise)

Preceding gene: 124026298

Following gene: 124026292

Centisome position: 69.77

GC content: 38.91

Gene sequence:

>1326_bases
ATGCAAGAAAGGGAACAATGGCGATCAGGACTGGGATTCGCGCTCGCTGCGGCAGGTAGTGCTGTAGGCCTTGGAAATCT
TTGGGGCTTTGCTTATAGGTCATCTCAAGGCGGTGGACTTGCTTTTCTTATCCTTTATGTATTGGTTGTTTTAGTTGTTT
GCCTACCTGTCTTAGTTGCAGAGATGGTCTTGGGCAGGAGTACTGCTAGTAGTCCTTTCCTTGCGCCAATTAAAGCTGCT
GGTGAAAATTGGAAGCCTTTAGGGTGGCTTTTTGCAATAGCTTCTTGTGGAATTCTTTCTTATTACGCAGTGATAATGGG
ATGGACAATTGATACTTTCTTCCATTCTTTATTTATTGGCCTACCCTCAGATATGACTGAGGCGGGAGAATTTTTTGGTA
AAATTAGCAGTGGTAATAGTGTATTTGTAGGTCAAATAATCAGCTTACTGTTAACTGCTTTTGTTGTGGTTGCAGGCGTT
CGTGGAGGTATAGAAAAACTAACAAAATGGGCAATGCCATTTTTATTTGGACTCCTTTTGTTGTTAGCTATATGGGCTGC
AACTTTATCTGGTGCATGGGAAGGATATACATCATTTTTACTTAAATGGGACTCCTCTCAACTTTTTGATAAAAACACAA
TAAGTAATGCGTTTAAACAAGCTTTCTTTTCTTTAAGTTTGGGTATTGGAATTATGGTTGCCTATTCCTCATATCTAAAC
CGTAAAAATCATCTTCCTAAAGAAGCTTTGAGAGTTGCAACTTTGGATACTGCTGTGGGTTTACTTGCAGGGCTGATTAC
ATTCCCTGTCGTTATGAGTTTTGGTTTGAAAGATGTTATAAGTGAATCAACTGTTGGGACTTTATTTATTGCTCTTCCAA
CTGGATTCGCAAATCTTGGATTGTTTGGGAGATTGATTGCTGCCGTTTTCTTCGGATTGGCCTTTATAGCTGCTATTACC
TCTTCTATTTCATTAATGGAAGTACCAGTATCTTCTTTGATGGACAGGCTGAATTGGAGTAGGAAGAAGGCCGTTTGGAC
TTCAACATTAGTGATCTTTTTGATTGGAATACCGTCTGCTATTTCTACAGACTTTTTAGGCAAGTCTGACGCTATCTGTA
ATACACTCTTGATATTAGGTGGCCTTCTAATTTCAATTCTTTTGGGTTGGATTGTTCCAAATCGTTATGATGAGGATCTT
GCAAATTCTAATGCTAATTTAAGAGTTAGAAGGTATCTAAAGTTTATGCTGCGCTGGGTGTCTCCACCAGTTATTGCTAT
TGGACTTTATTTAACGGTCTTATCTACAATAGAAACATTTGCTTAA

Upstream 100 bases:

>100_bases
GCTTTCACATTGTGAAGTCAAGTATGACCAGTCTCCCATTTAAAGGTATAACCCAGTTATATATTTACCAGTTTCTTCTG
GATTTTAATAGAGATTTATT

Downstream 100 bases:

>100_bases
TCTGAAAGTTGTTTCCATTCAGTAACCCCTTTAGGTTTATCAATTAAATCAATTCCAATATTTTTAAAATCATCTCTTAT
CTTATCAGCGAGTAAAAAGT

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MQEREQWRSGLGFALAAAGSAVGLGNLWGFAYRSSQGGGLAFLILYVLVVLVVCLPVLVAEMVLGRSTASSPFLAPIKAA
GENWKPLGWLFAIASCGILSYYAVIMGWTIDTFFHSLFIGLPSDMTEAGEFFGKISSGNSVFVGQIISLLLTAFVVVAGV
RGGIEKLTKWAMPFLFGLLLLLAIWAATLSGAWEGYTSFLLKWDSSQLFDKNTISNAFKQAFFSLSLGIGIMVAYSSYLN
RKNHLPKEALRVATLDTAVGLLAGLITFPVVMSFGLKDVISESTVGTLFIALPTGFANLGLFGRLIAAVFFGLAFIAAIT
SSISLMEVPVSSLMDRLNWSRKKAVWTSTLVIFLIGIPSAISTDFLGKSDAICNTLLILGGLLISILLGWIVPNRYDEDL
ANSNANLRVRRYLKFMLRWVSPPVIAIGLYLTVLSTIETFA

Sequences:

>Translated_441_residues
MQEREQWRSGLGFALAAAGSAVGLGNLWGFAYRSSQGGGLAFLILYVLVVLVVCLPVLVAEMVLGRSTASSPFLAPIKAA
GENWKPLGWLFAIASCGILSYYAVIMGWTIDTFFHSLFIGLPSDMTEAGEFFGKISSGNSVFVGQIISLLLTAFVVVAGV
RGGIEKLTKWAMPFLFGLLLLLAIWAATLSGAWEGYTSFLLKWDSSQLFDKNTISNAFKQAFFSLSLGIGIMVAYSSYLN
RKNHLPKEALRVATLDTAVGLLAGLITFPVVMSFGLKDVISESTVGTLFIALPTGFANLGLFGRLIAAVFFGLAFIAAIT
SSISLMEVPVSSLMDRLNWSRKKAVWTSTLVIFLIGIPSAISTDFLGKSDAICNTLLILGGLLISILLGWIVPNRYDEDL
ANSNANLRVRRYLKFMLRWVSPPVIAIGLYLTVLSTIETFA
>Mature_441_residues
MQEREQWRSGLGFALAAAGSAVGLGNLWGFAYRSSQGGGLAFLILYVLVVLVVCLPVLVAEMVLGRSTASSPFLAPIKAA
GENWKPLGWLFAIASCGILSYYAVIMGWTIDTFFHSLFIGLPSDMTEAGEFFGKISSGNSVFVGQIISLLLTAFVVVAGV
RGGIEKLTKWAMPFLFGLLLLLAIWAATLSGAWEGYTSFLLKWDSSQLFDKNTISNAFKQAFFSLSLGIGIMVAYSSYLN
RKNHLPKEALRVATLDTAVGLLAGLITFPVVMSFGLKDVISESTVGTLFIALPTGFANLGLFGRLIAAVFFGLAFIAAIT
SSISLMEVPVSSLMDRLNWSRKKAVWTSTLVIFLIGIPSAISTDFLGKSDAICNTLLILGGLLISILLGWIVPNRYDEDL
ANSNANLRVRRYLKFMLRWVSPPVIAIGLYLTVLSTIETFA

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI188528618, Length=405, Percent_Identity=26.4197530864197, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI4507043, Length=402, Percent_Identity=24.6268656716418, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI21361581, Length=406, Percent_Identity=24.1379310344828, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI289191351, Length=412, Percent_Identity=24.7572815533981, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI4557046, Length=412, Percent_Identity=24.7572815533981, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI289191377, Length=412, Percent_Identity=24.7572815533981, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI171184408, Length=415, Percent_Identity=24.8192771084337, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI171184406, Length=415, Percent_Identity=24.8192771084337, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI171184404, Length=415, Percent_Identity=24.8192771084337, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI7657587, Length=459, Percent_Identity=24.1830065359477, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI197276623, Length=349, Percent_Identity=27.2206303724928, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI54607094, Length=349, Percent_Identity=27.2206303724928, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI58219014, Length=321, Percent_Identity=26.1682242990654, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI33354281, Length=320, Percent_Identity=26.25, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI194018524, Length=307, Percent_Identity=27.6872964169381, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI12408638, Length=293, Percent_Identity=27.3037542662116, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17554804, Length=389, Percent_Identity=26.9922879177378, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI133952791, Length=427, Percent_Identity=25.0585480093677, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17555248, Length=430, Percent_Identity=24.1860465116279, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17569475, Length=418, Percent_Identity=24.1626794258373, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71998244, Length=349, Percent_Identity=27.7936962750716, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI17136952, Length=416, Percent_Identity=26.4423076923077, Blast_Score=122, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24661428, Length=490, Percent_Identity=25.1020408163265, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI281364394, Length=418, Percent_Identity=26.0765550239234, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI28574704, Length=418, Percent_Identity=26.0765550239234, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI17136950, Length=418, Percent_Identity=26.0765550239234, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI28574702, Length=418, Percent_Identity=26.0765550239234, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24582567, Length=439, Percent_Identity=28.0182232346241, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI45551088, Length=382, Percent_Identity=26.7015706806283, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24652942, Length=382, Percent_Identity=26.7015706806283, Blast_Score=109, Evalue=4e-24,
Organism=Drosophila melanogaster, GI281363702, Length=474, Percent_Identity=26.5822784810127, Blast_Score=106, Evalue=3e-23,
Organism=Drosophila melanogaster, GI19921936, Length=408, Percent_Identity=25, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI45550877, Length=404, Percent_Identity=24.7524752475248, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI45551183, Length=404, Percent_Identity=24.7524752475248, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI281365034, Length=417, Percent_Identity=24.9400479616307, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI281363700, Length=346, Percent_Identity=28.3236994219653, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24762620, Length=407, Percent_Identity=27.5184275184275, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24582569, Length=400, Percent_Identity=27.25, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI281364136, Length=414, Percent_Identity=25.8454106280193, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24639516, Length=306, Percent_Identity=25.8169934640523, Blast_Score=82, Evalue=7e-16,
Organism=Drosophila melanogaster, GI221329674, Length=306, Percent_Identity=25.8169934640523, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24639514, Length=306, Percent_Identity=25.8169934640523, Blast_Score=82, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24654186, Length=264, Percent_Identity=25.7575757575758, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19921352, Length=222, Percent_Identity=25.2252252252252, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24584353, Length=222, Percent_Identity=25.2252252252252, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 47641; Mature: 47641

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: PS01199 RIBOSOMAL_L1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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CCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]