Click here to switch to the map view.

The map label for this gene is psbA [H]

Identifier: 124026032

GI number: 124026032

Start: 1111009

End: 1112091

Strand: Direct

Name: psbA [H]

Synonym: NATL1_13251

Alternate gene names: 124026032

Gene position: 1111009-1112091 (Clockwise)

Preceding gene: 124026027

Following gene: 124026033

Centisome position: 59.58

GC content: 46.63

Gene sequence:

>1083_bases
ATGACCACCATTCAGCAGCAGCGTTCTTCGTTGCTCAAAGGTTGGCCACAATTCTGCGAGTGGGTTACTTCCACCAACAA
CCGTATCTATGTCGGTTGGTTCGGTGTATTGATGATCCCTTGCCTTCTTGCGGCAACAACTTGTTTCATCGTTGCATTTA
TCGCTGCTCCTCCAGTTGATATCGACGGTATCCGTGAGCCAGTAGCTGGTTCATTCATGTATGGAAACAACATCATTTCT
GGTGCTGTTGTTCCTTCAAGTAACGCTATCGGCCTTCACTTCTACCCAATCTGGGAAGCAGCAACTCTTGATGAGTGGCT
ATATAACGGTGGCCCTTACCAGCTTGTAATCTTCCACTTCCTTATCGGTATCTCTGCATACATGGGACGTCAGTGGGAGC
TTTCATACCGTTTAGGTATGCGCCCATGGATCTGTGTTGCTTACTCAGCTCCTGTATCAGCAGCTTTCGCTGTATTCCTT
GTTTACCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTTTT
CCAGGCTGAGCACAACATCTTGATGCACCCATTCCATATGGCTGGTGTAGCAGGTATGTTCGGTGGTGCTTTGTTCTCTG
CAATGCACGGTTCTTTGGTTACTTCATCACTTATCCGTGAGACCACAGGACTTGATTCACAGAACTATGGTTACAAGTTT
GGACAAGAAGAAGAGACATACAACATCGTTGCAGCTCATGGCTACTTCGGTCGTTTGATCTTCCAATATGCAAGCTTCAA
CAACAGCCGTAGTCTTCACTTCTTCTTGGCTTCATGGCCAGTGATTTGTGTTTGGTTGACATCTATGGGCATCTGCACCA
TGGCGTTCAACTTGAACGGTTTCAACTTCAACCAGTCTGTAGTTGATACTTCAGGCAAGGTTGTACCAACCTGGGGTGAC
GTACTTAACCGTGCAAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTAGCAGCTGC
TGAGTCTACTTCTGTAGCTCTTGTTGCACCTGCAATCGGTTAA

Upstream 100 bases:

>100_bases
CATCCGACATATTTGATTTAGAAGCTAAATTCCTTCTGTCAGATTTTTTGATCTGATCTTATTTATTGCTCTTTCGAGCA
AATACTTAACGCTCTTATTC

Downstream 100 bases:

>100_bases
GTCCTTAACTTGATTTTTTAAAAGCCCTCTTTTAGAGGGCTTTTTTTTTACCTTTTAGGTTTAGTCAAATAAAAGGAGGG
CAACAAGAAATTCTTTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein; Photosystem II protein D1 [H]

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MTTIQQQRSSLLKGWPQFCEWVTSTNNRIYVGWFGVLMIPCLLAATTCFIVAFIAAPPVDIDGIREPVAGSFMYGNNIIS
GAVVPSSNAIGLHFYPIWEAATLDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFL
VYPFGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMAGVAGMFGGALFSAMHGSLVTSSLIRETTGLDSQNYGYKF
GQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLASWPVICVWLTSMGICTMAFNLNGFNFNQSVVDTSGKVVPTWGD
VLNRANLGMEVMHERNAHNFPLDLAAAESTSVALVAPAIG

Sequences:

>Translated_360_residues
MTTIQQQRSSLLKGWPQFCEWVTSTNNRIYVGWFGVLMIPCLLAATTCFIVAFIAAPPVDIDGIREPVAGSFMYGNNIIS
GAVVPSSNAIGLHFYPIWEAATLDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFL
VYPFGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMAGVAGMFGGALFSAMHGSLVTSSLIRETTGLDSQNYGYKF
GQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLASWPVICVWLTSMGICTMAFNLNGFNFNQSVVDTSGKVVPTWGD
VLNRANLGMEVMHERNAHNFPLDLAAAESTSVALVAPAIG
>Mature_359_residues
TTIQQQRSSLLKGWPQFCEWVTSTNNRIYVGWFGVLMIPCLLAATTCFIVAFIAAPPVDIDGIREPVAGSFMYGNNIISG
AVVPSSNAIGLHFYPIWEAATLDEWLYNGGPYQLVIFHFLIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLV
YPFGQGSFSDGMPLGISGTFNFMFVFQAEHNILMHPFHMAGVAGMFGGALFSAMHGSLVTSSLIRETTGLDSQNYGYKFG
QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLASWPVICVWLTSMGICTMAFNLNGFNFNQSVVDTSGKVVPTWGDV
LNRANLGMEVMHERNAHNFPLDLAAAESTSVALVAPAIG

Specific function: This is one of the two reaction center proteins of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005867 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 39638; Mature: 39507

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTIQQQRSSLLKGWPQFCEWVTSTNNRIYVGWFGVLMIPCLLAATTCFIVAFIAAPPVD
CCCHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC
IDGIREPVAGSFMYGNNIISGAVVPSSNAIGLHFYPIWEAATLDEWLYNGGPYQLVIFHF
CCCCCCCCCCCEEECCCEEECEEECCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHH
LIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGISGT
HHHHHHHHCCEEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCC
FNFMFVFQAEHNILMHPFHMAGVAGMFGGALFSAMHGSLVTSSLIRETTGLDSQNYGYKF
EEEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLASWPVICVWLTSMGICTMAFNLNG
CCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHCCEEEEEEECCC
FNFNQSVVDTSGKVVPTWGDVLNRANLGMEVMHERNAHNFPLDLAAAESTSVALVAPAIG
CCCCCHHCCCCCCEEECHHHHHHHCCCCHHHHHHCCCCCCCEEEEECCCCCEEEEECCCC
>Mature Secondary Structure 
TTIQQQRSSLLKGWPQFCEWVTSTNNRIYVGWFGVLMIPCLLAATTCFIVAFIAAPPVD
CCHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCC
IDGIREPVAGSFMYGNNIISGAVVPSSNAIGLHFYPIWEAATLDEWLYNGGPYQLVIFHF
CCCCCCCCCCCEEECCCEEECEEECCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHH
LIGISAYMGRQWELSYRLGMRPWICVAYSAPVSAAFAVFLVYPFGQGSFSDGMPLGISGT
HHHHHHHHCCEEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCC
FNFMFVFQAEHNILMHPFHMAGVAGMFGGALFSAMHGSLVTSSLIRETTGLDSQNYGYKF
EEEEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
GQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLASWPVICVWLTSMGICTMAFNLNG
CCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHCCEEEEEEECCC
FNFNQSVVDTSGKVVPTWGDVLNRANLGMEVMHERNAHNFPLDLAAAESTSVALVAPAIG
CCCCCHHCCCCCCEEECHHHHHHHCCCCHHHHHHCCCCCCCEEEEECCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA