BacMap

Definition	Prochlorococcus marinus str. NATL1A, complete genome.
Accession	NC_008819
Length	1,864,731

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The map label for this gene is cbpA [C]

Identifier: 124025005

GI number: 124025005

Start: 271054

End: 271989

Strand: Direct

Name: cbpA [C]

Synonym: NATL1_02921

Alternate gene names: 124025005

Gene position: 271054-271989 (Clockwise)

Preceding gene: 124025001

Following gene: 124025006

Centisome position: 14.54

GC content: 32.69

Gene sequence:

>936_bases
ATGGAATTAAACGGTTTTAAGGATTATTTCAAAATTCTTGGCATTAGCAGAAATGCTACCGATCAAGAAATCAAAAGTGC
ATTCAGAAAACTTGCTAGACAATTTCATCCTGATTTACATCCAAATGATCAGAAGGCTGAGTCGGAATTCAAAGAAATCA
ATGCAGCTTACGAGATTCTTTCTGATGAGGCTAAAAAAAAGTCTTATGAACAACATTTAAGTTATTGGTTCAAAAAAAGA
GCTGGAAAATCTAGAGATTTTTCTACAGAAAATAATGATAACCAATTTGATGAATATCTAAACTTTGATGATTTTTTGAG
TGATTTAATTGGAAGATTTAGTGAGGTTAGTCAAGATATTTACTCAAATATATCTTCAAATAAGAATGCACAATCACTAA
ATCTTGATGCAGAATTTAATTTGCAGATTAGTTTTTTAGAAGCTTTGAATGGAACAAAAAAAAATCTTTTGGTGAATGAT
GAACGTATTGAGGTAACAATCCCACAAGGAATTGAAACAGGATCAAAAATACGTATTAAAAATAAGGGCAACATACAGTC
TGGAAAAGGGAAAAGAGGAGATTTATTGATTGAAGTCAGTGTTAAATCTCATCCGATTTGGAAAGTAAAAGGTTTAGATG
TTTATGCAGATTTACCTCTTTCTTTAGATGAATTTGCTTTGGGAGCAAATATTATGGTTGTCTCTCCTCAAGGTGACACA
TATCTATCAATACCTTCTGGAAGTTTACCCGAGCAAAAATTGAGATTACAAGGCCAAGGATTACATAACTTAGATACCCA
AGGAGATTTGTTTTTTACTCTAAAACTAAAGTTACCTGAAAATTGGTCAGCTGATGAGCTGAGACTTCTTGAAAAGCTTA
GATCTGTTCGAATAGATGAACCTCGATCAAGCTGGTTCGAGAAGGCTAGGACTTAA

Upstream 100 bases:

>100_bases
CAAGGTTCAATTACGTTCAGCATTCTCAATTTTTACATACTAGATTTAGACAAAATTAGAAAAAAATTGACTCTTAGCAC
TTGAAAAAGCTTTGATTTTC

Downstream 100 bases:

>100_bases
AGGAAGTAAAATGTAGTTATCTTGATTGGTCCATATGGATCTTACTTATCGGCCCCGTCGTCTTCGCAGAACAAACTCTT
TAAGAGAGATGGTTCGAGAG

Product: DnaJ3 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MELNGFKDYFKILGISRNATDQEIKSAFRKLARQFHPDLHPNDQKAESEFKEINAAYEILSDEAKKKSYEQHLSYWFKKR
AGKSRDFSTENNDNQFDEYLNFDDFLSDLIGRFSEVSQDIYSNISSNKNAQSLNLDAEFNLQISFLEALNGTKKNLLVND
ERIEVTIPQGIETGSKIRIKNKGNIQSGKGKRGDLLIEVSVKSHPIWKVKGLDVYADLPLSLDEFALGANIMVVSPQGDT
YLSIPSGSLPEQKLRLQGQGLHNLDTQGDLFFTLKLKLPENWSADELRLLEKLRSVRIDEPRSSWFEKART

Sequences:

>Translated_311_residues
MELNGFKDYFKILGISRNATDQEIKSAFRKLARQFHPDLHPNDQKAESEFKEINAAYEILSDEAKKKSYEQHLSYWFKKR
AGKSRDFSTENNDNQFDEYLNFDDFLSDLIGRFSEVSQDIYSNISSNKNAQSLNLDAEFNLQISFLEALNGTKKNLLVND
ERIEVTIPQGIETGSKIRIKNKGNIQSGKGKRGDLLIEVSVKSHPIWKVKGLDVYADLPLSLDEFALGANIMVVSPQGDT
YLSIPSGSLPEQKLRLQGQGLHNLDTQGDLFFTLKLKLPENWSADELRLLEKLRSVRIDEPRSSWFEKART
>Mature_311_residues
MELNGFKDYFKILGISRNATDQEIKSAFRKLARQFHPDLHPNDQKAESEFKEINAAYEILSDEAKKKSYEQHLSYWFKKR
AGKSRDFSTENNDNQFDEYLNFDDFLSDLIGRFSEVSQDIYSNISSNKNAQSLNLDAEFNLQISFLEALNGTKKNLLVND
ERIEVTIPQGIETGSKIRIKNKGNIQSGKGKRGDLLIEVSVKSHPIWKVKGLDVYADLPLSLDEFALGANIMVVSPQGDT
YLSIPSGSLPEQKLRLQGQGLHNLDTQGDLFFTLKLKLPENWSADELRLLEKLRSVRIDEPRSSWFEKART

Specific function: DNA-Binding Protein That Preferentially Recognizes A Curved DNA Sequence. It Is Probably A Functional Analog Of Dnaj; Displays Overlapping Activities With Dnaj, But Functions Under Different Conditions, Probably Acting As A Molecular Chaperone In An Adapt

COG id: COG2214

COG function: function code O; DnaJ-class molecular chaperone

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 J domain [H]

Homologues:

Organism=Homo sapiens, GI205360840, Length=344, Percent_Identity=25, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI205360838, Length=344, Percent_Identity=25, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI7706495, Length=314, Percent_Identity=28.6624203821656, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI6631085, Length=346, Percent_Identity=25.1445086705202, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI5453690, Length=346, Percent_Identity=23.9884393063584, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI201862518, Length=344, Percent_Identity=23.2558139534884, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI201862587, Length=344, Percent_Identity=23.2558139534884, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI56549115, Length=344, Percent_Identity=23.2558139534884, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI39204547, Length=317, Percent_Identity=22.397476340694, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI24308127, Length=66, Percent_Identity=43.9393939393939, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4885495, Length=66, Percent_Identity=45.4545454545455, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI17388799, Length=66, Percent_Identity=45.4545454545455, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI194306642, Length=65, Percent_Identity=47.6923076923077, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI194306640, Length=65, Percent_Identity=47.6923076923077, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI56687498, Length=65, Percent_Identity=47.6923076923077, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4504511, Length=63, Percent_Identity=46.031746031746, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI9558755, Length=105, Percent_Identity=37.1428571428571, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI45504382, Length=65, Percent_Identity=43.0769230769231, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI1787235, Length=320, Percent_Identity=29.0625, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1786197, Length=377, Percent_Identity=22.5464190981432, Blast_Score=105, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI212645553, Length=317, Percent_Identity=22.397476340694, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17534355, Length=65, Percent_Identity=56.9230769230769, Blast_Score=79, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17554644, Length=63, Percent_Identity=47.6190476190476, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI115532378, Length=65, Percent_Identity=47.6923076923077, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17507263, Length=63, Percent_Identity=46.031746031746, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115532476, Length=85, Percent_Identity=42.3529411764706, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17554900, Length=65, Percent_Identity=44.6153846153846, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323870, Length=65, Percent_Identity=46.1538461538462, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6324265, Length=63, Percent_Identity=52.3809523809524, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6323119, Length=64, Percent_Identity=51.5625, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6320888, Length=107, Percent_Identity=37.3831775700935, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85726398, Length=352, Percent_Identity=26.4204545454545, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI19920464, Length=308, Percent_Identity=24.025974025974, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24658562, Length=326, Percent_Identity=26.3803680981595, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24658555, Length=326, Percent_Identity=26.3803680981595, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI18858081, Length=340, Percent_Identity=25, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI28574949, Length=334, Percent_Identity=24.8502994011976, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24654066, Length=107, Percent_Identity=41.1214953271028, Blast_Score=78, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24654070, Length=107, Percent_Identity=41.1214953271028, Blast_Score=78, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24654068, Length=107, Percent_Identity=41.1214953271028, Blast_Score=78, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24654072, Length=107, Percent_Identity=41.1214953271028, Blast_Score=78, Evalue=9e-15,
Organism=Drosophila melanogaster, GI20129487, Length=349, Percent_Identity=25.7879656160458, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24584014, Length=349, Percent_Identity=25.7879656160458, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24668492, Length=66, Percent_Identity=46.969696969697, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI17648033, Length=69, Percent_Identity=55.0724637681159, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24584630, Length=69, Percent_Identity=55.0724637681159, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646562, Length=79, Percent_Identity=44.3037974683544, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646560, Length=79, Percent_Identity=44.3037974683544, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646558, Length=79, Percent_Identity=44.3037974683544, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24646556, Length=79, Percent_Identity=44.3037974683544, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357547, Length=79, Percent_Identity=44.3037974683544, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI45549272, Length=66, Percent_Identity=42.4242424242424, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45552813, Length=66, Percent_Identity=42.4242424242424, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=50, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45552811, Length=66, Percent_Identity=42.4242424242424, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17737735, Length=65, Percent_Identity=43.0769230769231, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24668523, Length=65, Percent_Identity=43.0769230769231, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28574723, Length=65, Percent_Identity=43.0769230769231, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002939
- InterPro:   IPR001623
- InterPro:   IPR018253
- InterPro:   IPR008971
- InterPro:   IPR015609
- InterPro:   IPR003095 [H]

Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]

EC number: NA

Molecular weight: Translated: 35526; Mature: 35526

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNGFKDYFKILGISRNATDQEIKSAFRKLARQFHPDLHPNDQKAESEFKEINAAYEIL
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
SDEAKKKSYEQHLSYWFKKRAGKSRDFSTENNDNQFDEYLNFDDFLSDLIGRFSEVSQDI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH
YSNISSNKNAQSLNLDAEFNLQISFLEALNGTKKNLLVNDERIEVTIPQGIETGSKIRIK
HHHHCCCCCCCEEECCCEEEEEEEEHHHCCCCCCCEEECCCEEEEECCCCCCCCCEEEEE
NKGNIQSGKGKRGDLLIEVSVKSHPIWKVKGLDVYADLPLSLDEFALGANIMVVSPQGDT
CCCCCCCCCCCCCCEEEEEEECCCCEEEEECCEEEECCCCCHHHHHCCCEEEEECCCCCE
YLSIPSGSLPEQKLRLQGQGLHNLDTQGDLFFTLKLKLPENWSADELRLLEKLRSVRIDE
EEECCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCC
PRSSWFEKART
HHHHHHHHHCC
>Mature Secondary Structure
MELNGFKDYFKILGISRNATDQEIKSAFRKLARQFHPDLHPNDQKAESEFKEINAAYEIL
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
SDEAKKKSYEQHLSYWFKKRAGKSRDFSTENNDNQFDEYLNFDDFLSDLIGRFSEVSQDI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH
YSNISSNKNAQSLNLDAEFNLQISFLEALNGTKKNLLVNDERIEVTIPQGIETGSKIRIK
HHHHCCCCCCCEEECCCEEEEEEEEHHHCCCCCCCEEECCCEEEEECCCCCCCCCEEEEE
NKGNIQSGKGKRGDLLIEVSVKSHPIWKVKGLDVYADLPLSLDEFALGANIMVVSPQGDT
CCCCCCCCCCCCCCEEEEEEECCCCEEEEECCEEEECCCCCHHHHHCCCEEEEECCCCCE
YLSIPSGSLPEQKLRLQGQGLHNLDTQGDLFFTLKLKLPENWSADELRLLEKLRSVRIDE
EEECCCCCCCHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCC
PRSSWFEKART
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]