Click here to switch to the map view.

The map label for this gene is hycB

Identifier: 124023993

GI number: 124023993

Start: 2032278

End: 2033249

Strand: Reverse

Name: hycB

Synonym: P9303_23001

Alternate gene names: NA

Gene position: 2033249-2032278 (Counterclockwise)

Preceding gene: 124023994

Following gene: 124023992

Centisome position: 75.79

GC content: 57.0

Gene sequence:

>972_bases
GTGAAGTTGATCTGTGGTGCCAGCAATCAGGATTTGCTTTCCATAACAGACCTTTGTGCGGTTTTTGCCGCGGCTGGTAT
TCACTGTGTGGATGTGGCGGCCGATGCTGCCGTTGTCAGGGCAGCTCGTCAGGGGCTTGATTGGGTGCAAGCGCGGAGTG
GTTTTCGGCCTTGGTTGATGGTGAGCATCAGCGATGGCAAGGATGCCCATTTTCGAAAAGCTTGGTTTGATCCTGCTCGC
TGTCCAAGCGATTGTGCGCGGCCTTGTCAACATGCTTGTCCTGCTGAGGCGATTGGTGAGCAAGGGGGGGTTCAGCTAAG
TCGTTGTTATGGCTGTGGACGATGTCTGCCGACTTGTCCTCTTGGTTTGATCGATGAACACGACCGGCGACTTGAACTGA
GAGATTTCGGACCTCTGTTGGCGGAATTGCATCCTGATGCAGTCGAGATTCACACGGCACCTGGGCGCGCTAAGGCCTTT
GAATCCACAGTTGCAGAGCTGATGTCGGCTCAGGTGCCTCTGCAGCGGATTGGGGTGAGCTGTGGTCTTGAGGGGCATGG
GCTCACGGTTGAGGCTTTAGCAAGTGAGTTGTGGCAAAGACATGTTTGTTTAAGGCGTTCTGGGCAAAGACCTCTTTGGC
AGCTTGATGGCCGACCCATGAGTGGCGATATCGGGTCAGGAACGGCTCGAGTTGCTGTAGCGCTCTGGCGGAAGCTGCGG
CCATTGGCTCCGCCTGGCCCCCTCCAGTTAGCGGGGGGCACCAACGCCCACACGATCTCCTATCTCTCTAGTGACCATGG
GCCGGCAGGTATTGCCTTTGGAGGCATGGCTCGTCGTCTCCTCCAGCCCTGGTTGCTTGAAGCACAGGCCAGGCATGTGA
GCCTGAGAGAATGGCCTGAGGGTTGGCAAGCTGCTCTTGCGCAGGCAGAGCAGCTTGTTCGTCCATGGCTGTTCCGCCAA
TCTGGGTCGTAA

Upstream 100 bases:

>100_bases
AGCCGATGTCCACTTTGCTCGGGGTCTGAACACTATTCCTTCTAACCCTTTCCAGCAGAGTGCTCTTCGCGGTGAGCTCG
CCCTGGCCAGTGGGTCTTGG

Downstream 100 bases:

>100_bases
GCCTGCTAGAAGGCCGTTAGGGGAGCCATTTCTGCATGGCTGCGGCTGAGGGCCATGAAGCCAAAGCGTATTACTGATGA
TCTCGACCGATTGTTGGATT

Product: Fe-S-cluster-containing hydrogenase

Products: NA

Alternate protein names: LdpA Protein; 4Fe-4S Ferredoxin; Light Dependent Period; Ferredoxin 4Fe-4S Type; Alpha-Helical Ferredoxin

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MKLICGASNQDLLSITDLCAVFAAAGIHCVDVAADAAVVRAARQGLDWVQARSGFRPWLMVSISDGKDAHFRKAWFDPAR
CPSDCARPCQHACPAEAIGEQGGVQLSRCYGCGRCLPTCPLGLIDEHDRRLELRDFGPLLAELHPDAVEIHTAPGRAKAF
ESTVAELMSAQVPLQRIGVSCGLEGHGLTVEALASELWQRHVCLRRSGQRPLWQLDGRPMSGDIGSGTARVAVALWRKLR
PLAPPGPLQLAGGTNAHTISYLSSDHGPAGIAFGGMARRLLQPWLLEAQARHVSLREWPEGWQAALAQAEQLVRPWLFRQ
SGS

Sequences:

>Translated_323_residues
MKLICGASNQDLLSITDLCAVFAAAGIHCVDVAADAAVVRAARQGLDWVQARSGFRPWLMVSISDGKDAHFRKAWFDPAR
CPSDCARPCQHACPAEAIGEQGGVQLSRCYGCGRCLPTCPLGLIDEHDRRLELRDFGPLLAELHPDAVEIHTAPGRAKAF
ESTVAELMSAQVPLQRIGVSCGLEGHGLTVEALASELWQRHVCLRRSGQRPLWQLDGRPMSGDIGSGTARVAVALWRKLR
PLAPPGPLQLAGGTNAHTISYLSSDHGPAGIAFGGMARRLLQPWLLEAQARHVSLREWPEGWQAALAQAEQLVRPWLFRQ
SGS
>Mature_323_residues
MKLICGASNQDLLSITDLCAVFAAAGIHCVDVAADAAVVRAARQGLDWVQARSGFRPWLMVSISDGKDAHFRKAWFDPAR
CPSDCARPCQHACPAEAIGEQGGVQLSRCYGCGRCLPTCPLGLIDEHDRRLELRDFGPLLAELHPDAVEIHTAPGRAKAF
ESTVAELMSAQVPLQRIGVSCGLEGHGLTVEALASELWQRHVCLRRSGQRPLWQLDGRPMSGDIGSGTARVAVALWRKLR
PLAPPGPLQLAGGTNAHTISYLSSDHGPAGIAFGGMARRLLQPWLLEAQARHVSLREWPEGWQAALAQAEQLVRPWLFRQ
SGS

Specific function: Unknown

COG id: COG1142

COG function: function code C; Fe-S-cluster-containing hydrogenase components 2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34960; Mature: 34960

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLICGASNQDLLSITDLCAVFAAAGIHCVDVAADAAVVRAARQGLDWVQARSGFRPWLM
CEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCEEE
VSISDGKDAHFRKAWFDPARCPSDCARPCQHACPAEAIGEQGGVQLSRCYGCGRCLPTCP
EEECCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCEEHHHHCCCCCCCCCC
LGLIDEHDRRLELRDFGPLLAELHPDAVEIHTAPGRAKAFESTVAELMSAQVPLQRIGVS
CCCCCCCCCEEEHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHCHH
CGLEGHGLTVEALASELWQRHVCLRRSGQRPLWQLDGRPMSGDIGSGTARVAVALWRKLR
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHC
PLAPPGPLQLAGGTNAHTISYLSSDHGPAGIAFGGMARRLLQPWLLEAQARHVSLREWPE
CCCCCCCEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
GWQAALAQAEQLVRPWLFRQSGS
HHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKLICGASNQDLLSITDLCAVFAAAGIHCVDVAADAAVVRAARQGLDWVQARSGFRPWLM
CEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCEEE
VSISDGKDAHFRKAWFDPARCPSDCARPCQHACPAEAIGEQGGVQLSRCYGCGRCLPTCP
EEECCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCHHHHCCCCCCEEHHHHCCCCCCCCCC
LGLIDEHDRRLELRDFGPLLAELHPDAVEIHTAPGRAKAFESTVAELMSAQVPLQRIGVS
CCCCCCCCCEEEHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCHHHHCHH
CGLEGHGLTVEALASELWQRHVCLRRSGQRPLWQLDGRPMSGDIGSGTARVAVALWRKLR
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHC
PLAPPGPLQLAGGTNAHTISYLSSDHGPAGIAFGGMARRLLQPWLLEAQARHVSLREWPE
CCCCCCCEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
GWQAALAQAEQLVRPWLFRQSGS
HHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA