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The map label for this gene is psaD [H]

Identifier: 124023964

GI number: 124023964

Start: 2006463

End: 2006891

Strand: Direct

Name: psaD [H]

Synonym: P9303_22711

Alternate gene names: 124023964

Gene position: 2006463-2006891 (Clockwise)

Preceding gene: 124023963

Following gene: 124023965

Centisome position: 74.79

GC content: 50.82

Gene sequence:

>429_bases
ATGACAGCAACGGCGTTAACAGGTCAGTATCCCAAGTATCTAGGGAGCACCGGGGGCCTTCTAAATTCCGCTGAAACCGA
AGAGAAATACGCCATCACTTGGAGCAGCTCAACAGCTCAGGCGTTCGAACTACCCACTGGCGGCGCAGCTGAAATGAATG
AGGGCGAGAACCTCATGTACTTCGCTCGCAAAGAACAATGCCTCGCATTAGGCACTCAACTGCGTACGTTCAAACCCAAG
ATTGAAGACTACAAAATTTATCGCGTCTTCCCTGGTGGTGACACCGAATTCCTGCATCCAAAAGACGGAGTATTCCCCGA
GAAAGTCAATGAAGGGAGGGTTATGGTGAACGTCAACAATCGCCGGATCGGAGAAAACGCCAATCCAGCGAAATTAAAAT
TCAGCGGGCGCAACACCTACGACGCCTGA

Upstream 100 bases:

>100_bases
ATGTTGACGGGTGTGAAGCTTGCTGCCAAGCAGTGCCATAGGGCACAAAACGCAGTGCTACTTTTCACCAGTAACGGTAT
GCCGATTCTCGAGGTTACTC

Downstream 100 bases:

>100_bases
GTCCCTTTCGCCTGAAGGGTAGGGGGATCTTCAACCACTCGGCACCAGCTGCGAAGATTCCCTCATGCTCAGCTCTGATC
GTGACCATTTCTTTGAGATG

Product: photosystem I protein PsaD

Products: NA

Alternate protein names: Photosystem I 16 kDa polypeptide; PSI-D [H]

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTATALTGQYPKYLGSTGGLLNSAETEEKYAITWSSSTAQAFELPTGGAAEMNEGENLMYFARKEQCLALGTQLRTFKPK
IEDYKIYRVFPGGDTEFLHPKDGVFPEKVNEGRVMVNVNNRRIGENANPAKLKFSGRNTYDA

Sequences:

>Translated_142_residues
MTATALTGQYPKYLGSTGGLLNSAETEEKYAITWSSSTAQAFELPTGGAAEMNEGENLMYFARKEQCLALGTQLRTFKPK
IEDYKIYRVFPGGDTEFLHPKDGVFPEKVNEGRVMVNVNNRRIGENANPAKLKFSGRNTYDA
>Mature_141_residues
TATALTGQYPKYLGSTGGLLNSAETEEKYAITWSSSTAQAFELPTGGAAEMNEGENLMYFARKEQCLALGTQLRTFKPKI
EDYKIYRVFPGGDTEFLHPKDGVFPEKVNEGRVMVNVNNRRIGENANPAKLKFSGRNTYDA

Specific function: PsaD can form complexes with ferredoxin and ferredoxin- oxidoreductase in photosystem I (PS I) reaction center [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psaD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003685 [H]

Pfam domain/function: PF02531 PsaD [H]

EC number: NA

Molecular weight: Translated: 15740; Mature: 15609

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATALTGQYPKYLGSTGGLLNSAETEEKYAITWSSSTAQAFELPTGGAAEMNEGENLMY
CCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEE
FARKEQCLALGTQLRTFKPKIEDYKIYRVFPGGDTEFLHPKDGVFPEKVNEGRVMVNVNN
EECCCCHHHHCCCCEECCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCEEEEEECC
RRIGENANPAKLKFSGRNTYDA
EECCCCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
TATALTGQYPKYLGSTGGLLNSAETEEKYAITWSSSTAQAFELPTGGAAEMNEGENLMY
CCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCEEE
FARKEQCLALGTQLRTFKPKIEDYKIYRVFPGGDTEFLHPKDGVFPEKVNEGRVMVNVNN
EECCCCHHHHCCCCEECCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCCCCEEEEEECC
RRIGENANPAKLKFSGRNTYDA
EECCCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1653017 [H]