Click here to switch to the map view.

The map label for this gene is rlpA [C]

Identifier: 124023941

GI number: 124023941

Start: 1987450

End: 1988115

Strand: Reverse

Name: rlpA [C]

Synonym: P9303_22481

Alternate gene names: 124023941

Gene position: 1988115-1987450 (Counterclockwise)

Preceding gene: 124023946

Following gene: 124023940

Centisome position: 74.11

GC content: 50.0

Gene sequence:

>666_bases
TTGGTTGAAGGACGTATTCCTGCTGGGGATGATTTTTTCTCCTCATTCAAGTGTCGTCTGCTACTAATGAAATTTTCCGT
TTCGCTTCTTGTTCTTGCTGGTGTTTGCTCCAGCAGTGCTGCACTGTTACCAGCCTTTGCTCGTGATCTTGACCTCGACA
AAAAGGTCACCAGGGAACAGGTCAAGAAAGCTCTGCTTGAACGAATCTCGCTTCTTGCGACTCCTTTGTCCGCCAATCAA
GGCAGCTCAGATCAAGGCAGTGCTGATGTCGCTACTGGTTTAACTGTTGATTCAGTTGTTGAGACACCACAAGCGTTACC
AATCGTTCCAGTTGCAAAGCTCAACCGACCTGTCAAGCCAACTCCCACTGTTGTTCAAGTGAGCACTGGTGAAGCAAGCT
GGTACGGCCCGGGCTTCTTCGGAAACCGAACTGCAAGTGGTGAAGTTTTCAGGCCAGGCACAATGACAGCTGCTCATCGC
AGCTTGCCTTTTGGTACCAAGGTAAGGGTGACCAACCTTTGGAATGATCGTTCAGCTGTTGTGACAATCAACGATCGCGG
CCCTTTTATCGCTCATCGCGTCATCGATCTTGCTCATGGTGCTGCCCATGAGCTTGGTTTGATATCGAGTGGTATTGCCC
AAGTGCGTCTTGAGGTGCTGCGCTGA

Upstream 100 bases:

>100_bases
CTGTTATTTAGCTGGTTAAAGTTGCATCAATCTGACGAGGAGGTGCTGTTCGAGCTCTCCTAAAGAGAGGATGTAATTCG
TACGGTTTGGGGAACTTTGG

Downstream 100 bases:

>100_bases
GGTTTTCTGTTCTCAGTTCAACGGCTGAGTTACATCGATGGCGTAAGCATCAGCAGTCTTCGGTTTATTTTGTCCCCACC
ATGGGCGCTTTGCACCGCGC

Product: lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MVEGRIPAGDDFFSSFKCRLLLMKFSVSLLVLAGVCSSSAALLPAFARDLDLDKKVTREQVKKALLERISLLATPLSANQ
GSSDQGSADVATGLTVDSVVETPQALPIVPVAKLNRPVKPTPTVVQVSTGEASWYGPGFFGNRTASGEVFRPGTMTAAHR
SLPFGTKVRVTNLWNDRSAVVTINDRGPFIAHRVIDLAHGAAHELGLISSGIAQVRLEVLR

Sequences:

>Translated_221_residues
MVEGRIPAGDDFFSSFKCRLLLMKFSVSLLVLAGVCSSSAALLPAFARDLDLDKKVTREQVKKALLERISLLATPLSANQ
GSSDQGSADVATGLTVDSVVETPQALPIVPVAKLNRPVKPTPTVVQVSTGEASWYGPGFFGNRTASGEVFRPGTMTAAHR
SLPFGTKVRVTNLWNDRSAVVTINDRGPFIAHRVIDLAHGAAHELGLISSGIAQVRLEVLR
>Mature_221_residues
MVEGRIPAGDDFFSSFKCRLLLMKFSVSLLVLAGVCSSSAALLPAFARDLDLDKKVTREQVKKALLERISLLATPLSANQ
GSSDQGSADVATGLTVDSVVETPQALPIVPVAKLNRPVKPTPTVVQVSTGEASWYGPGFFGNRTASGEVFRPGTMTAAHR
SLPFGTKVRVTNLWNDRSAVVTINDRGPFIAHRVIDLAHGAAHELGLISSGIAQVRLEVLR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=79, Percent_Identity=48.1012658227848, Blast_Score=70, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 23560; Mature: 23560

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEGRIPAGDDFFSSFKCRLLLMKFSVSLLVLAGVCSSSAALLPAFARDLDLDKKVTREQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
VKKALLERISLLATPLSANQGSSDQGSADVATGLTVDSVVETPQALPIVPVAKLNRPVKP
HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCHHHCCCCCCC
TPTVVQVSTGEASWYGPGFFGNRTASGEVFRPGTMTAAHRSLPFGTKVRVTNLWNDRSAV
CCCEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCEEEEEEEECCCEEE
VTINDRGPFIAHRVIDLAHGAAHELGLISSGIAQVRLEVLR
EEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVEGRIPAGDDFFSSFKCRLLLMKFSVSLLVLAGVCSSSAALLPAFARDLDLDKKVTREQ
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
VKKALLERISLLATPLSANQGSSDQGSADVATGLTVDSVVETPQALPIVPVAKLNRPVKP
HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCHHHHHCCCCCCCCCCHHHCCCCCCC
TPTVVQVSTGEASWYGPGFFGNRTASGEVFRPGTMTAAHRSLPFGTKVRVTNLWNDRSAV
CCCEEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCEEEEEEEECCCEEE
VTINDRGPFIAHRVIDLAHGAAHELGLISSGIAQVRLEVLR
EEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]