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The map label for this gene is rpoD4 [H]

Identifier: 124023660

GI number: 124023660

Start: 1724844

End: 1725785

Strand: Reverse

Name: rpoD4 [H]

Synonym: P9303_19601

Alternate gene names: 124023660

Gene position: 1725785-1724844 (Counterclockwise)

Preceding gene: 124023661

Following gene: 124023658

Centisome position: 64.33

GC content: 50.74

Gene sequence:

>942_bases
ATGGTTTCAGCAGCGCCTAAATCAGCAGAAACACAGAGGCGTAGAAGTTCTGATCCTGTCAGCTGGTATCTCACAACGAT
TGGGCGTATACCTCTTCTTACCCCTGCTGAAGAGATTGAACTTGGCAATCAAGTTCAGACGATGATGAGTCTCACTCAAG
ACGGCTCAGTTGCGCCTGATGATAAGGAGTTTACGACACATCAGCGTCGCATGATTCGCATTGGCCGTCGTGCCAAAGAA
CGCATGATGAAGGCCAATCTTCGTCTTGTTGTGAGTGTTGCCAAGAAATATCAAGGCAAAGGACTGGAACTCCTCGATCT
CATCCAGGAGGGTTCACTTGGTTTAGAGCGTGCTGTTGAAAAGTTTGATCCAACCCGTGGCTACAAGTTTTCGACCTATG
CGTTTTGGTGGATTCGTCAGAGCATGACACGTGCGATTGCGTGCCAGTCGCGCACGATTCGCCTTCCTGTACATCTCAGT
GAAAGGCTGACCACAATTCGAAAGGTTTCTCTGGATTTGGCTCACAAGCTTGGAGCAATGCCCAGTCGCTCCGAGATCGC
TGAAGCGATGGATATCCCTGTTGATGAACTCGACTCTTTATTGCGTCAGGCGCTAACAACCAGCAGTTTGGATGCGCCAG
TGAATGGCGAAGAAGGACGAAGTTTTCTTGGTGATCTGATCGCTGATTCCTCTCTTGGTGAACCTCTCGACAAGGTGGAG
CAGCGTATTCATCATGAGCAGCTCGGGCGTTGGCTCAGCCATCTCAGTGAGCAGGAGCAGCATGTTCTTAAGCTCCGTTT
TGGTTTGGAAACCCATGATCGACACACCTTGGCTGAGATTGGTCGCTTGATGGAAGTCTCGCGTGAGCGTGTTCGTCAAG
TGGAACTAAAGGCCTTGCGCAAGCTGCGTAACCTCACGCGTAGGGTGCCCAACGGGATCTGA

Upstream 100 bases:

>100_bases
CTCGATTCCCCTGCATGAATCCGAAAGCTTTTTTAAAGCTGCAGGGTTTTGCTGAAATTTGTAGGAAAATTTCCTTCCAA
ATAAATCAGGAGCCGTTGAA

Downstream 100 bases:

>100_bases
AACTGCCTTACTTATCTTGTTGTCTCTGCTTGCTTCCAGTAATTAGTGATCAAGAGGGCTGTCAATCTTCAGCCCAGATG
TAGCGAGTGAGTTCGTTGGC

Product: type II alternative RNA polymerase sigma factor, sigma-70 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MVSAAPKSAETQRRRSSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSLTQDGSVAPDDKEFTTHQRRMIRIGRRAKE
RMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLS
ERLTTIRKVSLDLAHKLGAMPSRSEIAEAMDIPVDELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADSSLGEPLDKVE
QRIHHEQLGRWLSHLSEQEQHVLKLRFGLETHDRHTLAEIGRLMEVSRERVRQVELKALRKLRNLTRRVPNGI

Sequences:

>Translated_313_residues
MVSAAPKSAETQRRRSSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSLTQDGSVAPDDKEFTTHQRRMIRIGRRAKE
RMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLS
ERLTTIRKVSLDLAHKLGAMPSRSEIAEAMDIPVDELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADSSLGEPLDKVE
QRIHHEQLGRWLSHLSEQEQHVLKLRFGLETHDRHTLAEIGRLMEVSRERVRQVELKALRKLRNLTRRVPNGI
>Mature_313_residues
MVSAAPKSAETQRRRSSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSLTQDGSVAPDDKEFTTHQRRMIRIGRRAKE
RMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLS
ERLTTIRKVSLDLAHKLGAMPSRSEIAEAMDIPVDELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADSSLGEPLDKVE
QRIHHEQLGRWLSHLSEQEQHVLKLRFGLETHDRHTLAEIGRLMEVSRERVRQVELKALRKLRNLTRRVPNGI

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG0568

COG function: function code K; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1789448, Length=233, Percent_Identity=46.7811158798283, Blast_Score=220, Evalue=7e-59,
Organism=Escherichia coli, GI1789098, Length=292, Percent_Identity=40.4109589041096, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1789871, Length=239, Percent_Identity=28.0334728033473, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788231, Length=206, Percent_Identity=28.6407766990291, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 700 (log & stationary phase) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR009042
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR017848
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00140 Sigma70_r1_2; PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 35662; Mature: 35662

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS00715 SIGMA70_1 ; PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSAAPKSAETQRRRSSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSLTQDGSVAPD
CCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCC
DKEFTTHQRRMIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHH
KFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAM
HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCC
PSRSEIAEAMDIPVDELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADSSLGEPLDKVE
CCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHH
QRIHHEQLGRWLSHLSEQEQHVLKLRFGLETHDRHTLAEIGRLMEVSRERVRQVELKALR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRNLTRRVPNGI
HHHHHHHHCCCCC
>Mature Secondary Structure
MVSAAPKSAETQRRRSSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMSLTQDGSVAPD
CCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCCCCC
DKEFTTHQRRMIRIGRRAKERMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHH
KFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAM
HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCC
PSRSEIAEAMDIPVDELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADSSLGEPLDKVE
CCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHH
QRIHHEQLGRWLSHLSEQEQHVLKLRFGLETHDRHTLAEIGRLMEVSRERVRQVELKALR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLRNLTRRVPNGI
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA