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The map label for this gene is ubiD [C]

Identifier: 124023590

GI number: 124023590

Start: 1651838

End: 1653403

Strand: Reverse

Name: ubiD [C]

Synonym: P9303_18901

Alternate gene names: 124023590

Gene position: 1653403-1651838 (Counterclockwise)

Preceding gene: 124023596

Following gene: 124023589

Centisome position: 61.63

GC content: 55.11

Gene sequence:

>1566_bases
ATGCCCCTGCTTCGTCCCGGACCTGCGTCCCAAGACATGCGGGACTTCCTAGCCCTACTTGAGCAACGTGGCCAACTAAG
GCGGATCAGTGCCCCCGTAGATCCAGATTTAGAACTCGCCGCTATTACTGATCGGGTGCTGGGCTTGGGTGGGCCGGCCC
TGTTGTTCGAAAACGTGATTGGTTCATCGATGCCAGTGGCAGTGAATCTGATGGGCACCTTGGAGCGAGTGGTGTGGAGC
ATGGGTCTGGACAACGCTCAGCAACTTGAGGATCTGGGAACTCGTTTGGCTCTGCTGCAGCAACCAAGGCCGCCAAAGGG
TCTGCAAGAAACCAGACAGTTTGCAAGTGTGTTTTGGGATCTGATCAAAGCGCGACCAGATCTGGATCTCACACCTCCCT
GCCATCAGCAGGTGCTGCGTGGAGATGCGTTGAATCTCGACAACCTGCCTTTGATCCGTCCCTGGCCAGGCGATGCCAGT
GGTGTGATCACCCTGGGCCTTGTGATTACCAAAGACCCGGAGACGGGAGTGCCGAATGTGGGGGTCTATCGCCTACAACG
CCAATCGCCAAAGACCATGACGGTGCATTGGCTGAGCGTTCGCGGCGGAGCCAGGCACCTACGCAAAGCTGCTGCCATGG
GCCAGAAGCTTGAGGTAGCCATTGCTATTGGTGTACATCCTCTGCTGATCATGGCCGCAGCAACTCCGATTCCTGTGCAA
CTCAGTGAATGGCTTTTTGCTGGTCTTTATGCAGGAGAGGGTGTACGTCTCACTGGCTGCAAAACACTGGATCTGAAAGT
CCCTAGCCACAGTGAAGTGGTGTTGGAAGGAACCATTACACCAGGTGAGGAATTAGAGGATGGTCCATTTGGTGACCATA
TGGGCTTTTACGGAGGAGTGGAGTCCTCACCATTGGTGCGCTTCCACTGCGTGACTCAACGCCGCGATCCGATTTTCCTC
ACGACGTTTAGCGGCCGCCCCCCCAAGGAAGAAGCGATGCTTGCCATCGCCTTGAACCGCATCTACACGCCTATCTTGCG
TCAACAGGTGCCGGAGATTGTTGACTTCTTTCTACCGATGGAGGCCCTCAGTTACAAGCTGGCGGTGATTGCAATCGATA
AGTCTTATCCAGGACAAGCCAAGCGTGCCGCGATGGCTTTCTGGAGCGCATTGCCCCAATTCACCTATACAAAATTCGTT
GTCGTGGTAGATGCAAACATCAACGTGAGAGATCCACGCCAAGTCGTATGGGCTATCGCTGCACAGGTCGATCCGCAAAG
GGATCTCTTTGTACTTGAGAACACCCCCTTCGACAGCCTTGATTTCGCTAGCGAACATCTAGGGCTTGGAGGCAGGATGG
CCATCGACGCCACCACTAAGATTGGGCCTGAGAAGCGCCATGAATGGGGCGAGCCACTCAGCCGGGATGCAGATCTAGAA
AGCAGGGTGGATGCTCGATGGCAGGAGTTGGGGCTGGAGGATTTGGGCAGCGAAGAACCTGATCCAAGCCTGTTCGGTTA
TGTGATGGAGAGCCTTTGTCGTCATGCGATGGTCAAAAAGACCTGA

Upstream 100 bases:

>100_bases
CACATCCGCTGCCACATGGAAATAAGCGAGCTGCATGGCCTCGATAGGGAACGACGTGCGCCACAGTAACTAGATCATTT
TGCTGGCTGTCTTACCAACC

Downstream 100 bases:

>100_bases
ATTAAAATGGACTGATTAGCAAAAAACACTCGGCAGATATCTGTTGGTTGAGATGGTTCAAAAGAGACAAATTACACAAC
ACAAAAACAAATTGGAAATA

Product: 3-polyprenyl-4-hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 520

Protein sequence:

>521_residues
MPLLRPGPASQDMRDFLALLEQRGQLRRISAPVDPDLELAAITDRVLGLGGPALLFENVIGSSMPVAVNLMGTLERVVWS
MGLDNAQQLEDLGTRLALLQQPRPPKGLQETRQFASVFWDLIKARPDLDLTPPCHQQVLRGDALNLDNLPLIRPWPGDAS
GVITLGLVITKDPETGVPNVGVYRLQRQSPKTMTVHWLSVRGGARHLRKAAAMGQKLEVAIAIGVHPLLIMAAATPIPVQ
LSEWLFAGLYAGEGVRLTGCKTLDLKVPSHSEVVLEGTITPGEELEDGPFGDHMGFYGGVESSPLVRFHCVTQRRDPIFL
TTFSGRPPKEEAMLAIALNRIYTPILRQQVPEIVDFFLPMEALSYKLAVIAIDKSYPGQAKRAAMAFWSALPQFTYTKFV
VVVDANINVRDPRQVVWAIAAQVDPQRDLFVLENTPFDSLDFASEHLGLGGRMAIDATTKIGPEKRHEWGEPLSRDADLE
SRVDARWQELGLEDLGSEEPDPSLFGYVMESLCRHAMVKKT

Sequences:

>Translated_521_residues
MPLLRPGPASQDMRDFLALLEQRGQLRRISAPVDPDLELAAITDRVLGLGGPALLFENVIGSSMPVAVNLMGTLERVVWS
MGLDNAQQLEDLGTRLALLQQPRPPKGLQETRQFASVFWDLIKARPDLDLTPPCHQQVLRGDALNLDNLPLIRPWPGDAS
GVITLGLVITKDPETGVPNVGVYRLQRQSPKTMTVHWLSVRGGARHLRKAAAMGQKLEVAIAIGVHPLLIMAAATPIPVQ
LSEWLFAGLYAGEGVRLTGCKTLDLKVPSHSEVVLEGTITPGEELEDGPFGDHMGFYGGVESSPLVRFHCVTQRRDPIFL
TTFSGRPPKEEAMLAIALNRIYTPILRQQVPEIVDFFLPMEALSYKLAVIAIDKSYPGQAKRAAMAFWSALPQFTYTKFV
VVVDANINVRDPRQVVWAIAAQVDPQRDLFVLENTPFDSLDFASEHLGLGGRMAIDATTKIGPEKRHEWGEPLSRDADLE
SRVDARWQELGLEDLGSEEPDPSLFGYVMESLCRHAMVKKT
>Mature_520_residues
PLLRPGPASQDMRDFLALLEQRGQLRRISAPVDPDLELAAITDRVLGLGGPALLFENVIGSSMPVAVNLMGTLERVVWSM
GLDNAQQLEDLGTRLALLQQPRPPKGLQETRQFASVFWDLIKARPDLDLTPPCHQQVLRGDALNLDNLPLIRPWPGDASG
VITLGLVITKDPETGVPNVGVYRLQRQSPKTMTVHWLSVRGGARHLRKAAAMGQKLEVAIAIGVHPLLIMAAATPIPVQL
SEWLFAGLYAGEGVRLTGCKTLDLKVPSHSEVVLEGTITPGEELEDGPFGDHMGFYGGVESSPLVRFHCVTQRRDPIFLT
TFSGRPPKEEAMLAIALNRIYTPILRQQVPEIVDFFLPMEALSYKLAVIAIDKSYPGQAKRAAMAFWSALPQFTYTKFVV
VVDANINVRDPRQVVWAIAAQVDPQRDLFVLENTPFDSLDFASEHLGLGGRMAIDATTKIGPEKRHEWGEPLSRDADLES
RVDARWQELGLEDLGSEEPDPSLFGYVMESLCRHAMVKKT

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=489, Percent_Identity=45.8077709611452, Blast_Score=454, Evalue=1e-129,
Organism=Saccharomyces cerevisiae, GI6320748, Length=526, Percent_Identity=23.574144486692, Blast_Score=107, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 57455; Mature: 57324

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLLRPGPASQDMRDFLALLEQRGQLRRISAPVDPDLELAAITDRVLGLGGPALLFENVI
CCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
GSSMPVAVNLMGTLERVVWSMGLDNAQQLEDLGTRLALLQQPRPPKGLQETRQFASVFWD
CCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
LIKARPDLDLTPPCHQQVLRGDALNLDNLPLIRPWPGDASGVITLGLVITKDPETGVPNV
HHHCCCCCCCCCHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEEEEEECCCCCCCCCC
GVYRLQRQSPKTMTVHWLSVRGGARHLRKAAAMGQKLEVAIAIGVHPLLIMAAATPIPVQ
CEEEEECCCCCEEEEEEEEECCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCCCCHH
LSEWLFAGLYAGEGVRLTGCKTLDLKVPSHSEVVLEGTITPGEELEDGPFGDHMGFYGGV
HHHHHHHHHHCCCCEEEECCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
ESSPLVRFHCVTQRRDPIFLTTFSGRPPKEEAMLAIALNRIYTPILRQQVPEIVDFFLPM
CCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
EALSYKLAVIAIDKSYPGQAKRAAMAFWSALPQFTYTKFVVVVDANINVRDPRQVVWAIA
HHHCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHH
AQVDPQRDLFVLENTPFDSLDFASEHLGLGGRMAIDATTKIGPEKRHEWGEPLSRDADLE
HCCCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCHH
SRVDARWQELGLEDLGSEEPDPSLFGYVMESLCRHAMVKKT
HHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PLLRPGPASQDMRDFLALLEQRGQLRRISAPVDPDLELAAITDRVLGLGGPALLFENVI
CCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHH
GSSMPVAVNLMGTLERVVWSMGLDNAQQLEDLGTRLALLQQPRPPKGLQETRQFASVFWD
CCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
LIKARPDLDLTPPCHQQVLRGDALNLDNLPLIRPWPGDASGVITLGLVITKDPETGVPNV
HHHCCCCCCCCCHHHHHHHCCCCCCCCCCCEECCCCCCCCCEEEEEEEEECCCCCCCCCC
GVYRLQRQSPKTMTVHWLSVRGGARHLRKAAAMGQKLEVAIAIGVHPLLIMAAATPIPVQ
CEEEEECCCCCEEEEEEEEECCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCCCCHH
LSEWLFAGLYAGEGVRLTGCKTLDLKVPSHSEVVLEGTITPGEELEDGPFGDHMGFYGGV
HHHHHHHHHHCCCCEEEECCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
ESSPLVRFHCVTQRRDPIFLTTFSGRPPKEEAMLAIALNRIYTPILRQQVPEIVDFFLPM
CCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
EALSYKLAVIAIDKSYPGQAKRAAMAFWSALPQFTYTKFVVVVDANINVRDPRQVVWAIA
HHHCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHH
AQVDPQRDLFVLENTPFDSLDFASEHLGLGGRMAIDATTKIGPEKRHEWGEPLSRDADLE
HCCCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCHH
SRVDARWQELGLEDLGSEEPDPSLFGYVMESLCRHAMVKKT
HHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]