| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is 124023564
Identifier: 124023564
GI number: 124023564
Start: 1625320
End: 1625904
Strand: Reverse
Name: 124023564
Synonym: P9303_18641
Alternate gene names: NA
Gene position: 1625904-1625320 (Counterclockwise)
Preceding gene: 124023565
Following gene: 124023562
Centisome position: 60.61
GC content: 49.57
Gene sequence:
>585_bases ATGGGGACTGGCCAGACCTTGCAAGCTGAACGCATCCAGTTGCCTAAAGAACATGCTTTTAGGGTGAACGTTGCTTATCA AAGCAATGGAAGCCAAAGGCTGCACTATTTAATAACGCCCGAACGTCGAGCCCTTCTGAACACCATCCGTTATGCAGAAG GCACTTGGAAAGAAGGAAAAGACCTCGGATATCGCACAATGTTTGGAGGGGGTGTCTTTGAGGACCTCTCTCAACACCCC AACCGAGTTGTGGTGAAGTTCTACAGCAGTGCAGCAGCAGGGGCCTATCAATTCATCCCATCAACTTGGATGGCAGTAGC GAAGGAGCTGAACTTACCCAATTTCCAACCACAACATCAAGATCAAGCAGCGCTGCACTTAGTTAGCAAGCGCGGTGCTC TCAAGGAAATAGATTCTCTTGGTTTAACGCACTCCGCGATGGCTCGTCTTGCACCGGAATGGGCTTCGTTTCCTAATTGG GCTGGCAACAGCAGTTATGGACAGCCAGTCAAGAGCCATGCAGAGTTGGCAAAATTTTATTCAGCCAATTTGCGGCAACT GCAACAGCAGGCCTTAGCAAGCTAA
Upstream 100 bases:
>100_bases CGTGCTTCGCTCGTTCCCATTGCACTTTGGCTTTTCAAGCCAATCGAATCATTCGAATTGGGTCACGGCAACTTCCGCCA TGATCTGTCTGGGTGTTCTC
Downstream 100 bases:
>100_bases AAGCATCTAACTTCAGAACCAACAGAAGTTGTGTGCTTCTACTCGAAAGACATCCCTTGATTGCAACCAAACCCTAGCGT TGCCTTTGCGGATCACTCTC
Product: endolysin
Products: NA
Alternate protein names: Endolysin; Lysozyme; Phage Lysozyme; Endolysin/Phage Lysozyme; Phage Lysin; Glycoside Hydrolase Family; Lysozyme-Like; Bacteriophage Endolysin Protein; Autolysin A
Number of amino acids: Translated: 194; Mature: 193
Protein sequence:
>194_residues MGTGQTLQAERIQLPKEHAFRVNVAYQSNGSQRLHYLITPERRALLNTIRYAEGTWKEGKDLGYRTMFGGGVFEDLSQHP NRVVVKFYSSAAAGAYQFIPSTWMAVAKELNLPNFQPQHQDQAALHLVSKRGALKEIDSLGLTHSAMARLAPEWASFPNW AGNSSYGQPVKSHAELAKFYSANLRQLQQQALAS
Sequences:
>Translated_194_residues MGTGQTLQAERIQLPKEHAFRVNVAYQSNGSQRLHYLITPERRALLNTIRYAEGTWKEGKDLGYRTMFGGGVFEDLSQHP NRVVVKFYSSAAAGAYQFIPSTWMAVAKELNLPNFQPQHQDQAALHLVSKRGALKEIDSLGLTHSAMARLAPEWASFPNW AGNSSYGQPVKSHAELAKFYSANLRQLQQQALAS >Mature_193_residues GTGQTLQAERIQLPKEHAFRVNVAYQSNGSQRLHYLITPERRALLNTIRYAEGTWKEGKDLGYRTMFGGGVFEDLSQHPN RVVVKFYSSAAAGAYQFIPSTWMAVAKELNLPNFQPQHQDQAALHLVSKRGALKEIDSLGLTHSAMARLAPEWASFPNWA GNSSYGQPVKSHAELAKFYSANLRQLQQQALAS
Specific function: Unknown
COG id: COG4678
COG function: function code G; Muramidase (phage lambda lysozyme)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21646; Mature: 21514
Theoretical pI: Translated: 10.03; Mature: 10.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTGQTLQAERIQLPKEHAFRVNVAYQSNGSQRLHYLITPERRALLNTIRYAEGTWKEGK CCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCC DLGYRTMFGGGVFEDLSQHPNRVVVKFYSSAAAGAYQFIPSTWMAVAKELNLPNFQPQHQ CCCCHHHHCCHHHHHHHHCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCH DQAALHLVSKRGALKEIDSLGLTHSAMARLAPEWASFPNWAGNSSYGQPVKSHAELAKFY HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCHHHHCCCCCCCCCCCCCCHHHHHHHHHHH SANLRQLQQQALAS HHHHHHHHHHHHCC >Mature Secondary Structure GTGQTLQAERIQLPKEHAFRVNVAYQSNGSQRLHYLITPERRALLNTIRYAEGTWKEGK CCCCCCCHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCC DLGYRTMFGGGVFEDLSQHPNRVVVKFYSSAAAGAYQFIPSTWMAVAKELNLPNFQPQHQ CCCCHHHHCCHHHHHHHHCCCEEEEEEHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCH DQAALHLVSKRGALKEIDSLGLTHSAMARLAPEWASFPNWAGNSSYGQPVKSHAELAKFY HHHHHHHHHHCCHHHHHHHHCCCHHHHHHHCHHHHCCCCCCCCCCCCCCHHHHHHHHHHH SANLRQLQQQALAS HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA