| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is 124023553
Identifier: 124023553
GI number: 124023553
Start: 1612888
End: 1614489
Strand: Reverse
Name: 124023553
Synonym: P9303_18531
Alternate gene names: NA
Gene position: 1614489-1612888 (Counterclockwise)
Preceding gene: 124023555
Following gene: 124023551
Centisome position: 60.18
GC content: 52.5
Gene sequence:
>1602_bases ATGCATTCAGATCTCAAGCAGAAGCACTGGAGGCCGCAATGGTTCGTCCGTGGAGATGTCGACGGATTCCTAGGACTTGG CCTCGATAACTTGATTCAAGTCCTCTTGATAATTGCCTTATGCCGCAACGTGCTCGGCTATCCGAATGAATTAGTTTTCG GCACAATCCTTCCTGCCACAGGAATAAGCCTGCTGATAGGCAACCTTGCCTACGCGCATCAGGCTCATCAACTTGCCAGC ATCGAAAAACGTAGTGATCGGACAGCTCTGCCCTACGGAATTAACACCGTGAGCCTGTTTGCTTATGTGTTTTTGGTAAT GCTCCCTGTGAAACTCACCGCACTGGGCCAGGGAATGGATGAGGCAAGCGCTGTTCGCCTCTCCTGGCAAGCAGGGATGG TGGCTTGCCTGGGCTCTGGGCTGATCGAAACAGTAGGGGCTTTTACAGCAGGGGTACTGCGTCGCTGGCTGCCTAGGGCT GCATTACTTGCCACTCTCGCCGGAATTGCTCTTGGCTACATCGCCCTTGGTTTTCTGCTGCGTACCTATGCCCAACCTGT AGTGGGGCTGACAGTACTAGCAATTGTTCTGGTCACCTATTACGGACGCTTGCGATTGCCCATTCCTGGTGGCTTGCTTG CTGTTGTTATTGGCGTGGGGCTTGCTTGGAGTACTGGATTAATCGATAGCGACGCTAGCCGTTGGAGTCAGGAAGCAAGT CAGATTGGCTTGCGCCTTCCTCACCTAGAAATCGCCAATCTTTGGCATGCTCGTGGCCAGCTGCTGCCCTGGCTAGGGGT GATTGTGCCAATGGGCCTATTCAACGTGCTGGGTTCTCTTCAAAACATCGAAAGCGCAGAGGCGGCAGGTGATCGTTATT GCGTTCGAAGCTCTTTATTGATCGATGGCATCGGCACAATGGCTGCCGCAGGTCTGGGGTCTTGTTTTCCTACAACCATT TATATCGGCCATCCAGCCTGGAAGGAAATGGGGGCTCGCATTGGCTATTCCTGGCTAAATGGCTTGGTAATGGGTAGCGC TTGTCTTCTAGGTGTTTTTGGTTTGGTCGCAGAGTTGGTACCTATTGAGGCAGGCATGGCGATCGTGCTCTATATCGGCA TCGTGATTGCTGCTCAAGCCTTTCAAGCCACGCCCAGCACCCATGCACCGGCAGTAGCTCTTGGCCTGCTTCCTGGATTA GCAGGATGGGGTGCATCACTGATCAAGGCTGGTTTGCGCGCAGGAGGAGCCGGAAGCAATTCAGAACCTTTTAATTCAGC TTTATTAGGAAGGCTTCAAGAAGCTGATGTATGGGCAAGTGGCGCTTTTGCCCTTGAGCAAGGACAAATTATTACCGCCA TGCTGCTAGCGGCAATGTTGGTTTATGTGATCGAACAACGCTTTTTAGCAGCAAGCATTACTTCTTTCCTCGCATCTGCA GCCTCATGGATTGGGATCATCCACGCCTGGCGATTCACCCAGACCGATACTGTTCTGGAGCTTGGCTGGGGCGTTGGTAG CTCCTGGGCAATGGGCTATCTACTAATGGCAGTTGTGTTCATGCTCGCCGGTTTGCATCAGCGCAGATTGATTTCTGGTT GA
Upstream 100 bases:
>100_bases AACTGCCTCCTACTTATCAAGCAAGGCTCTTTTGAAAAGACATTGTCTTGCAACATCAGGAAGTAGCAAGACATGATTGA ACTGGTCTTACCCAACTGCC
Downstream 100 bases:
>100_bases CAAAACTGTTTTCAAAATGCATAAGTTAAAGAAATGAGCGAAGGCAACACTATTGGATCCACTTTGCCAGGCTGCTGCAT GTCACTCCTCTACGTTTGTA
Product: permease
Products: NA
Alternate protein names: Permease; MFS Transporter Xanthine/Uracil Permease; Permease Subfamily Putative; Sulphate Transporter; Regulator; Transcriptional Regulator; Permease Subfamily
Number of amino acids: Translated: 533; Mature: 533
Protein sequence:
>533_residues MHSDLKQKHWRPQWFVRGDVDGFLGLGLDNLIQVLLIIALCRNVLGYPNELVFGTILPATGISLLIGNLAYAHQAHQLAS IEKRSDRTALPYGINTVSLFAYVFLVMLPVKLTALGQGMDEASAVRLSWQAGMVACLGSGLIETVGAFTAGVLRRWLPRA ALLATLAGIALGYIALGFLLRTYAQPVVGLTVLAIVLVTYYGRLRLPIPGGLLAVVIGVGLAWSTGLIDSDASRWSQEAS QIGLRLPHLEIANLWHARGQLLPWLGVIVPMGLFNVLGSLQNIESAEAAGDRYCVRSSLLIDGIGTMAAAGLGSCFPTTI YIGHPAWKEMGARIGYSWLNGLVMGSACLLGVFGLVAELVPIEAGMAIVLYIGIVIAAQAFQATPSTHAPAVALGLLPGL AGWGASLIKAGLRAGGAGSNSEPFNSALLGRLQEADVWASGAFALEQGQIITAMLLAAMLVYVIEQRFLAASITSFLASA ASWIGIIHAWRFTQTDTVLELGWGVGSSWAMGYLLMAVVFMLAGLHQRRLISG
Sequences:
>Translated_533_residues MHSDLKQKHWRPQWFVRGDVDGFLGLGLDNLIQVLLIIALCRNVLGYPNELVFGTILPATGISLLIGNLAYAHQAHQLAS IEKRSDRTALPYGINTVSLFAYVFLVMLPVKLTALGQGMDEASAVRLSWQAGMVACLGSGLIETVGAFTAGVLRRWLPRA ALLATLAGIALGYIALGFLLRTYAQPVVGLTVLAIVLVTYYGRLRLPIPGGLLAVVIGVGLAWSTGLIDSDASRWSQEAS QIGLRLPHLEIANLWHARGQLLPWLGVIVPMGLFNVLGSLQNIESAEAAGDRYCVRSSLLIDGIGTMAAAGLGSCFPTTI YIGHPAWKEMGARIGYSWLNGLVMGSACLLGVFGLVAELVPIEAGMAIVLYIGIVIAAQAFQATPSTHAPAVALGLLPGL AGWGASLIKAGLRAGGAGSNSEPFNSALLGRLQEADVWASGAFALEQGQIITAMLLAAMLVYVIEQRFLAASITSFLASA ASWIGIIHAWRFTQTDTVLELGWGVGSSWAMGYLLMAVVFMLAGLHQRRLISG >Mature_533_residues MHSDLKQKHWRPQWFVRGDVDGFLGLGLDNLIQVLLIIALCRNVLGYPNELVFGTILPATGISLLIGNLAYAHQAHQLAS IEKRSDRTALPYGINTVSLFAYVFLVMLPVKLTALGQGMDEASAVRLSWQAGMVACLGSGLIETVGAFTAGVLRRWLPRA ALLATLAGIALGYIALGFLLRTYAQPVVGLTVLAIVLVTYYGRLRLPIPGGLLAVVIGVGLAWSTGLIDSDASRWSQEAS QIGLRLPHLEIANLWHARGQLLPWLGVIVPMGLFNVLGSLQNIESAEAAGDRYCVRSSLLIDGIGTMAAAGLGSCFPTTI YIGHPAWKEMGARIGYSWLNGLVMGSACLLGVFGLVAELVPIEAGMAIVLYIGIVIAAQAFQATPSTHAPAVALGLLPGL AGWGASLIKAGLRAGGAGSNSEPFNSALLGRLQEADVWASGAFALEQGQIITAMLLAAMLVYVIEQRFLAASITSFLASA ASWIGIIHAWRFTQTDTVLELGWGVGSSWAMGYLLMAVVFMLAGLHQRRLISG
Specific function: Unknown
COG id: COG2252
COG function: function code R; Permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56475; Mature: 56475
Theoretical pI: Translated: 8.21; Mature: 8.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSDLKQKHWRPQWFVRGDVDGFLGLGLDNLIQVLLIIALCRNVLGYPNELVFGTILPAT CCCCCHHHCCCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH GISLLIGNLAYAHQAHQLASIEKRSDRTALPYGINTVSLFAYVFLVMLPVKLTALGQGMD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC EASAVRLSWQAGMVACLGSGLIETVGAFTAGVLRRWLPRAALLATLAGIALGYIALGFLL CHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTYAQPVVGLTVLAIVLVTYYGRLRLPIPGGLLAVVIGVGLAWSTGLIDSDASRWSQEAS HHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH QIGLRLPHLEIANLWHARGQLLPWLGVIVPMGLFNVLGSLQNIESAEAAGDRYCVRSSLL HHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IDGIGTMAAAGLGSCFPTTIYIGHPAWKEMGARIGYSWLNGLVMGSACLLGVFGLVAELV HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PIEAGMAIVLYIGIVIAAQAFQATPSTHAPAVALGLLPGLAGWGASLIKAGLRAGGAGSN HHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SEPFNSALLGRLQEADVWASGAFALEQGQIITAMLLAAMLVYVIEQRFLAASITSFLASA CCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASWIGIIHAWRFTQTDTVLELGWGVGSSWAMGYLLMAVVFMLAGLHQRRLISG HHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCC >Mature Secondary Structure MHSDLKQKHWRPQWFVRGDVDGFLGLGLDNLIQVLLIIALCRNVLGYPNELVFGTILPAT CCCCCHHHCCCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH GISLLIGNLAYAHQAHQLASIEKRSDRTALPYGINTVSLFAYVFLVMLPVKLTALGQGMD HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC EASAVRLSWQAGMVACLGSGLIETVGAFTAGVLRRWLPRAALLATLAGIALGYIALGFLL CHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RTYAQPVVGLTVLAIVLVTYYGRLRLPIPGGLLAVVIGVGLAWSTGLIDSDASRWSQEAS HHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH QIGLRLPHLEIANLWHARGQLLPWLGVIVPMGLFNVLGSLQNIESAEAAGDRYCVRSSLL HHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IDGIGTMAAAGLGSCFPTTIYIGHPAWKEMGARIGYSWLNGLVMGSACLLGVFGLVAELV HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PIEAGMAIVLYIGIVIAAQAFQATPSTHAPAVALGLLPGLAGWGASLIKAGLRAGGAGSN HHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SEPFNSALLGRLQEADVWASGAFALEQGQIITAMLLAAMLVYVIEQRFLAASITSFLASA CCCHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ASWIGIIHAWRFTQTDTVLELGWGVGSSWAMGYLLMAVVFMLAGLHQRRLISG HHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA