Definition Prochlorococcus marinus str. MIT 9303, complete genome.
Accession NC_008820
Length 2,682,675

Click here to switch to the map view.

The map label for this gene is 124023307

Identifier: 124023307

GI number: 124023307

Start: 1408117

End: 1408749

Strand: Direct

Name: 124023307

Synonym: P9303_16051

Alternate gene names: NA

Gene position: 1408117-1408749 (Clockwise)

Preceding gene: 124023306

Following gene: 124023310

Centisome position: 52.49

GC content: 40.28

Gene sequence:

>633_bases
ATGACCGCTAACGGCAACAAGCAAGAGGACTTTCTTGATGAACACTTCAGCCTTAGTCAACAACAATTGATCTCATATAA
GGTTTTTTGGGTTGATAGTTGGTTAAATTACTGTTGGGATGATGTTCAGGGAAGGATCGGTGGGCTTGACCTACCTTCTA
TTGGCAGAGCCTATAAATCTCCCCCTCCAGCACAACTACTACTTTTGTCGAATGGCCAAAAAATAGAACTTTTTGACCGG
AATAAAGACTACCTCTTGAGGTCTATTCTTGAGGAGGGCAGAGAAGATGTTGGCGTTAGTGATTTCAATAGGCAGTGGCT
TTCTGAAAACTCTAATAATAAGGAATTGGAATCGATTGCTAAGCAATGGGATTCTTTTCTTGAAGAAGAGTGTAATGACG
GGATTGAAGCACAAGAAAGTGAGAGTATCAGACTAATCACATCCTCATTACCTGTAACTGTAAGAAATTTAGAATTTGCC
AAGCAAGAAAAAGAACAACACTGGCATTGGGAAATAAGCAACGGATTGATCATGCTGACTTGTAGCGAAGATGATTTCAA
TAACACCATCAAGCCTTATTTGGAGAGTGGTCAGGCAGACTACCTGGATTCTAATTCAGGTCCTTTATCTTAG

Upstream 100 bases:

>100_bases
AGTGATAGCGTGAATGGCTAGGCTATAATCCCTAGGCTTCAAACCTTTTACAGGTCGAGGTACAGGCGCTCTAATCTATT
GAAAAGTAAAATTCGACCTT

Downstream 100 bases:

>100_bases
GTTGATTTTACTGATCTGCAAAACTAAAATAACAGCATTAGTATTTATCATGATATCAAGTCAATAACAAGGCAGCGATC
AAAACCACGAAGCATTATCT

Product: gonadotropin-releasing hormone-like protein

Products: NA

Alternate protein names: GoNADotropin-Releasing Hormone-Like Protein

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTANGNKQEDFLDEHFSLSQQQLISYKVFWVDSWLNYCWDDVQGRIGGLDLPSIGRAYKSPPPAQLLLLSNGQKIELFDR
NKDYLLRSILEEGREDVGVSDFNRQWLSENSNNKELESIAKQWDSFLEEECNDGIEAQESESIRLITSSLPVTVRNLEFA
KQEKEQHWHWEISNGLIMLTCSEDDFNNTIKPYLESGQADYLDSNSGPLS

Sequences:

>Translated_210_residues
MTANGNKQEDFLDEHFSLSQQQLISYKVFWVDSWLNYCWDDVQGRIGGLDLPSIGRAYKSPPPAQLLLLSNGQKIELFDR
NKDYLLRSILEEGREDVGVSDFNRQWLSENSNNKELESIAKQWDSFLEEECNDGIEAQESESIRLITSSLPVTVRNLEFA
KQEKEQHWHWEISNGLIMLTCSEDDFNNTIKPYLESGQADYLDSNSGPLS
>Mature_209_residues
TANGNKQEDFLDEHFSLSQQQLISYKVFWVDSWLNYCWDDVQGRIGGLDLPSIGRAYKSPPPAQLLLLSNGQKIELFDRN
KDYLLRSILEEGREDVGVSDFNRQWLSENSNNKELESIAKQWDSFLEEECNDGIEAQESESIRLITSSLPVTVRNLEFAK
QEKEQHWHWEISNGLIMLTCSEDDFNNTIKPYLESGQADYLDSNSGPLS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24174; Mature: 24043

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTANGNKQEDFLDEHFSLSQQQLISYKVFWVDSWLNYCWDDVQGRIGGLDLPSIGRAYKS
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCC
PPPAQLLLLSNGQKIELFDRNKDYLLRSILEEGREDVGVSDFNRQWLSENSNNKELESIA
CCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHH
KQWDSFLEEECNDGIEAQESESIRLITSSLPVTVRNLEFAKQEKEQHWHWEISNGLIMLT
HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCEEEECCCEEEEE
CSEDDFNNTIKPYLESGQADYLDSNSGPLS
ECCCCCCCCHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TANGNKQEDFLDEHFSLSQQQLISYKVFWVDSWLNYCWDDVQGRIGGLDLPSIGRAYKS
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCC
PPPAQLLLLSNGQKIELFDRNKDYLLRSILEEGREDVGVSDFNRQWLSENSNNKELESIA
CCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHH
KQWDSFLEEECNDGIEAQESESIRLITSSLPVTVRNLEFAKQEKEQHWHWEISNGLIMLT
HHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHCCCEEEECCCEEEEE
CSEDDFNNTIKPYLESGQADYLDSNSGPLS
ECCCCCCCCHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA