Click here to switch to the map view.

The map label for this gene is psbD [H]

Identifier: 124022552

GI number: 124022552

Start: 765806

End: 766891

Strand: Reverse

Name: psbD [H]

Synonym: P9303_08431

Alternate gene names: 124022552

Gene position: 766891-765806 (Counterclockwise)

Preceding gene: 124022556

Following gene: 124022551

Centisome position: 28.59

GC content: 55.16

Gene sequence:

>1086_bases
TTGCGGCAGAACCGCACCGTTTTTTTTCCCATGACGATCGCTGTAGGACGCGCGCCTCAGCGGGGATGGTTTGACGTCCT
CGATGATTGGCTCAAGCGCGACCGCTTCGTTTTTGTTGGCTGGTCTGGCCTCCTCTTGTTCCCTACGGCCTATTTGGCCC
TAGGAGGCTGGTTTACCGGCACCACCTTCGTTACCTCCTGGTACACCCACGGCATTGCAAGTTCCTATCTGGAAGGCTGC
AATTTCCTTAGCGCCGCTGTAAGCACCCCCGCAGATGCGATGGGTCATAGCTTGCTGCTGCTATGGGGCCCTGAAGCTCA
GGGTGATTTCGTGCGCTGGTGTCAGCTCGGTGGCCTCTGGACCTTCGTAGCCCTTCACGGCTCCTTCGCTCTGATCGGCT
TCATGCTGAGACAGTTCGAGATTGCCCGTTTGGTTGGCATACGCCCCTACAACGCACTTGCCTTCTCAGGCCCAGTCGTT
GTCTTTCTGGCGTGTTTCCTCATTTACCCCCTAGGACAACACAGCTGGTTCTTTGCTCCCTCGTTTGGGGTAGCAGCAAT
CTTCCGCTTCATTCTCTTCTTGCAGGGCTTCCATAACTGGACTCTGAATCCCTTCCACATGATGGGAGTAGCAGGAATCC
TCGGTGGTGCCTTGCTTTGTGGCATCCATGGGGCAACGGTGCAGAACACCTTGTTCGAGGATGGCGCTATGTCAAACACC
TTTAAAGGGTTTGATCCCACCCAGGAAGAAGAGACCTATTCGATGGTCACCGCCAACCGCTTCTGGAGCCAGATCTTCGG
AATCGCCTTCTCCAACAAGCGCTGGCTGCACTTCTTCATGCTGTTCGTGCCTGTCATGGGCATGTGGACGCCTTCGGTTG
GCATCGTTGGCTTAGCAGTCAACCTGCGTGCCTACGACTTCGTGTCGCAGGAAGTACGCGCCGCTGAAGACCCCGAATTC
GAGACCTTCTACACCAAGAACGTTCTTCTTAACGAAGGTATCCGAGCCTGGATGTCCGTTGCGGACCAACCTCACGAAAA
CTTTGTATTCCCTGAAGAGGTAATGCCACGTGGAAACGCCCTTTAA

Upstream 100 bases:

>100_bases
CAAGCCAAAGGAGCAACACCACTACAAGGGGTTTCAGCTCAAGGCAACTCGCTCCCAAAGACCCCTTGGGGATTGTTAAA
GTCTTTGGGTATCCCACAGC

Downstream 100 bases:

>100_bases
ATCTTCCATACTGCAGAATGCCGGGGGATACAGCCTTGAATCCACCGGTTACGCATGGTGGGCAGGTAATGCCCGTTTCA
TCAACCTTTCTGGACGCCTA

Product: photosystem II PsbD protein (D2)

Products: NA

Alternate protein names: PSII D2 protein; Photosystem Q(A) protein [H]

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MRQNRTVFFPMTIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTHGIASSYLEGC
NFLSAAVSTPADAMGHSLLLLWGPEAQGDFVRWCQLGGLWTFVALHGSFALIGFMLRQFEIARLVGIRPYNALAFSGPVV
VFLACFLIYPLGQHSWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCGIHGATVQNTLFEDGAMSNT
FKGFDPTQEEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGMWTPSVGIVGLAVNLRAYDFVSQEVRAAEDPEF
ETFYTKNVLLNEGIRAWMSVADQPHENFVFPEEVMPRGNAL

Sequences:

>Translated_361_residues
MRQNRTVFFPMTIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTHGIASSYLEGC
NFLSAAVSTPADAMGHSLLLLWGPEAQGDFVRWCQLGGLWTFVALHGSFALIGFMLRQFEIARLVGIRPYNALAFSGPVV
VFLACFLIYPLGQHSWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCGIHGATVQNTLFEDGAMSNT
FKGFDPTQEEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGMWTPSVGIVGLAVNLRAYDFVSQEVRAAEDPEF
ETFYTKNVLLNEGIRAWMSVADQPHENFVFPEEVMPRGNAL
>Mature_361_residues
MRQNRTVFFPMTIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTHGIASSYLEGC
NFLSAAVSTPADAMGHSLLLLWGPEAQGDFVRWCQLGGLWTFVALHGSFALIGFMLRQFEIARLVGIRPYNALAFSGPVV
VFLACFLIYPLGQHSWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCGIHGATVQNTLFEDGAMSNT
FKGFDPTQEEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGMWTPSVGIVGLAVNLRAYDFVSQEVRAAEDPEF
ETFYTKNVLLNEGIRAWMSVADQPHENFVFPEEVMPRGNAL

Specific function: One of the two reaction center proteins of photosystem II (PSII), D2 is needed for assembly of a stable PSII complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000484
- InterPro:   IPR005868 [H]

Pfam domain/function: PF00124 Photo_RC [H]

EC number: NA

Molecular weight: Translated: 40587; Mature: 40587

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQNRTVFFPMTIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTG
CCCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCH
TTFVTSWYTHGIASSYLEGCNFLSAAVSTPADAMGHSLLLLWGPEAQGDFVRWCQLGGLW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCHHHHHHHHCCHH
TFVALHGSFALIGFMLRQFEIARLVGIRPYNALAFSGPVVVFLACFLIYPLGQHSWFFAP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHCCCCCCEEECC
SFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCGIHGATVQNTLFEDGAMSNT
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC
FKGFDPTQEEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGMWTPSVGIVGLAV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
NLRAYDFVSQEVRAAEDPEFETFYTKNVLLNEGIRAWMSVADQPHENFVFPEEVMPRGNA
EHHHHHHHHHHHHCCCCCCCHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCC
L
C
>Mature Secondary Structure
MRQNRTVFFPMTIAVGRAPQRGWFDVLDDWLKRDRFVFVGWSGLLLFPTAYLALGGWFTG
CCCCCEEEEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCH
TTFVTSWYTHGIASSYLEGCNFLSAAVSTPADAMGHSLLLLWGPEAQGDFVRWCQLGGLW
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCHHHHHHHHCCHH
TFVALHGSFALIGFMLRQFEIARLVGIRPYNALAFSGPVVVFLACFLIYPLGQHSWFFAP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHCCCCCCEEECC
SFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCGIHGATVQNTLFEDGAMSNT
CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC
FKGFDPTQEEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVMGMWTPSVGIVGLAV
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
NLRAYDFVSQEVRAAEDPEFETFYTKNVLLNEGIRAWMSVADQPHENFVFPEEVMPRGNA
EHHHHHHHHHHHHCCCCCCCHHEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12917642 [H]