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The map label for this gene is psbC [H]

Identifier: 124022551

GI number: 124022551

Start: 764428

End: 765822

Strand: Reverse

Name: psbC [H]

Synonym: P9303_08421

Alternate gene names: 124022551

Gene position: 765822-764428 (Counterclockwise)

Preceding gene: 124022552

Following gene: 124022549

Centisome position: 28.55

GC content: 53.48

Gene sequence:

>1395_bases
GTGGAAACGCCCTTTAAATCTTCCATACTGCAGAATGCCGGGGGATACAGCCTTGAATCCACCGGTTACGCATGGTGGGC
AGGTAATGCCCGTTTCATCAACCTTTCTGGACGCCTACTTGGCGCCCACGTTGCCCATGCAGGTCTGATGACTTTCTGGG
CAGGAGCCATGCTCCTGTTCGAAGTCAGTCACTTCACCTTCGACAAGCCAATTTTCGAGCAAGGCCTGATCTTGATGCCA
CATGTGGCAGCGCTTGGTTATGGCGTTGGCACAGGTGGCGAAATCGTAGACATCTACCCGTACTTCCATTGCGGGGTGAT
GCACTTAATCATCTCTGCTGTGTTCGGCTTAGGTGGGGTCTATCACGCCTTGGTCGGCCCTGAAAAGCTTCAGGATTACA
GCTCTCCATTTTTCAGGCTTGATTGGAAAGACAAAAATCAGATGACCAACATTCTTGGTTACAACCTGATTTTTCTAGGC
TGGGGAGCTCTTGCTCTGATCCTCAAGGCCTGCTTCTTTGGCGGCATCTATGACACCTGGGCTCCAGGTGGTGGCGACGT
GAGATTAATCACCAGCCCCACGCTTGATCCAGGCGTGATCTTTGGATACGTGTTCAGTTCTCCCTGGGGAGGTACCGGTT
GGATCACTGGTGTCAACTCAATGGAAGACCTCATTGGCGGCCACATTTACGTTGCTGCTCTTCTATTCGTTGGCGGCCAT
TTTCACATTGCCACCAAGCCATGGGGATGGGTTCGTAGAGCCTTCATCTGGAACGGAGAGGCCTACCTCAGCTACGCCCT
TGCTGGCCTGAGCTGTTGTGGTTTCATTGCCACGGCTTACATTTGGTTCAACGTCACCGCCTATCCATCAGAGTTCTACG
GTCCATCGAACGCCGAAGCCTCTCAAGCCCAGAGCTTCACCTTCCTTGTTCGTGACCAACGCCTTGGAGCAAATATTGGT
ACTGCCATGGGGCCAACAGGCCTTGGTAAGTACCTAATGCGTTCTCCTACTGGTGAGATCATCTTTGGTGGAGAAACGAT
GCGCTTCTGGGACTTCCGTGGTCCTTGGTTAGAACCACTGCGTGGCCCCAATGGCCTGAGCCTTGACAAGCTTCAGAACG
ATGTTCAGCCATGGCAAGTGCGCCGTGCTGCTGAATACATGACCCACGCCCCCAACGCCTCCATCAACTCAGTAGGTGGA
ATCATCACCGAGCCCAACTCGGTTAACTTCGTGAACCTTCGCCAGTGGTTAGCTGGTCATGCGTTCTTCCTAGCTTGGTT
CACCATCGTGGGGCACTGGTTCCACGCTGGTCGCGCCAGGGCTGTTGCAGCCGGGTTTGAAAAAGGCATCGATCGTAAGA
CCGAACCAGCCTTGTCAATGCCTGATCTCGACTGA

Upstream 100 bases:

>100_bases
TACACCAAGAACGTTCTTCTTAACGAAGGTATCCGAGCCTGGATGTCCGTTGCGGACCAACCTCACGAAAACTTTGTATT
CCCTGAAGAGGTAATGCCAC

Downstream 100 bases:

>100_bases
TTCTCAACATCAAGCATCGATCTTGTTAATCGGGAAAACCTTCAACCCTCGCCATTGCGGCGAGGGTTTTTTTTCATGAA
GCCAAAGGACATCAAAAAAA

Product: photosystem II PsbC protein (CP43)

Products: NA

Alternate protein names: PSII 43 kDa protein; Protein CP-43; Protein P6 [H]

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
METPFKSSILQNAGGYSLESTGYAWWAGNARFINLSGRLLGAHVAHAGLMTFWAGAMLLFEVSHFTFDKPIFEQGLILMP
HVAALGYGVGTGGEIVDIYPYFHCGVMHLIISAVFGLGGVYHALVGPEKLQDYSSPFFRLDWKDKNQMTNILGYNLIFLG
WGALALILKACFFGGIYDTWAPGGGDVRLITSPTLDPGVIFGYVFSSPWGGTGWITGVNSMEDLIGGHIYVAALLFVGGH
FHIATKPWGWVRRAFIWNGEAYLSYALAGLSCCGFIATAYIWFNVTAYPSEFYGPSNAEASQAQSFTFLVRDQRLGANIG
TAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLDKLQNDVQPWQVRRAAEYMTHAPNASINSVGG
IITEPNSVNFVNLRQWLAGHAFFLAWFTIVGHWFHAGRARAVAAGFEKGIDRKTEPALSMPDLD

Sequences:

>Translated_464_residues
METPFKSSILQNAGGYSLESTGYAWWAGNARFINLSGRLLGAHVAHAGLMTFWAGAMLLFEVSHFTFDKPIFEQGLILMP
HVAALGYGVGTGGEIVDIYPYFHCGVMHLIISAVFGLGGVYHALVGPEKLQDYSSPFFRLDWKDKNQMTNILGYNLIFLG
WGALALILKACFFGGIYDTWAPGGGDVRLITSPTLDPGVIFGYVFSSPWGGTGWITGVNSMEDLIGGHIYVAALLFVGGH
FHIATKPWGWVRRAFIWNGEAYLSYALAGLSCCGFIATAYIWFNVTAYPSEFYGPSNAEASQAQSFTFLVRDQRLGANIG
TAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLDKLQNDVQPWQVRRAAEYMTHAPNASINSVGG
IITEPNSVNFVNLRQWLAGHAFFLAWFTIVGHWFHAGRARAVAAGFEKGIDRKTEPALSMPDLD
>Mature_464_residues
METPFKSSILQNAGGYSLESTGYAWWAGNARFINLSGRLLGAHVAHAGLMTFWAGAMLLFEVSHFTFDKPIFEQGLILMP
HVAALGYGVGTGGEIVDIYPYFHCGVMHLIISAVFGLGGVYHALVGPEKLQDYSSPFFRLDWKDKNQMTNILGYNLIFLG
WGALALILKACFFGGIYDTWAPGGGDVRLITSPTLDPGVIFGYVFSSPWGGTGWITGVNSMEDLIGGHIYVAALLFVGGH
FHIATKPWGWVRRAFIWNGEAYLSYALAGLSCCGFIATAYIWFNVTAYPSEFYGPSNAEASQAQSFTFLVRDQRLGANIG
TAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLSLDKLQNDVQPWQVRRAAEYMTHAPNASINSVGG
IITEPNSVNFVNLRQWLAGHAFFLAWFTIVGHWFHAGRARAVAAGFEKGIDRKTEPALSMPDLD

Specific function: The 43 kDa protein (p6) is a component of the core of photosystem II. It is a chlorophyll binding protein [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. PsbC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932
- InterPro:   IPR005869 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 50889; Mature: 50889

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METPFKSSILQNAGGYSLESTGYAWWAGNARFINLSGRLLGAHVAHAGLMTFWAGAMLLF
CCCCHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
EVSHFTFDKPIFEQGLILMPHVAALGYGVGTGGEIVDIYPYFHCGVMHLIISAVFGLGGV
HHHHHCCCCCHHHCCCEEECHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
YHALVGPEKLQDYSSPFFRLDWKDKNQMTNILGYNLIFLGWGALALILKACFFGGIYDTW
HHHHCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC
APGGGDVRLITSPTLDPGVIFGYVFSSPWGGTGWITGVNSMEDLIGGHIYVAALLFVGGH
CCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCEECCCCHHHHHHCHHHHHHHHHHHCCC
FHIATKPWGWVRRAFIWNGEAYLSYALAGLSCCGFIATAYIWFNVTAYPSEFYGPSNAEA
EEEECCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHCCCCCCCH
SQAQSFTFLVRDQRLGANIGTAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPL
HHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHHC
RGPNGLSLDKLQNDVQPWQVRRAAEYMTHAPNASINSVGGIITEPNSVNFVNLRQWLAGH
CCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEHHHHHHHHH
AFFLAWFTIVGHWFHAGRARAVAAGFEKGIDRKTEPALSMPDLD
HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
METPFKSSILQNAGGYSLESTGYAWWAGNARFINLSGRLLGAHVAHAGLMTFWAGAMLLF
CCCCHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
EVSHFTFDKPIFEQGLILMPHVAALGYGVGTGGEIVDIYPYFHCGVMHLIISAVFGLGGV
HHHHHCCCCCHHHCCCEEECHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
YHALVGPEKLQDYSSPFFRLDWKDKNQMTNILGYNLIFLGWGALALILKACFFGGIYDTW
HHHHCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCC
APGGGDVRLITSPTLDPGVIFGYVFSSPWGGTGWITGVNSMEDLIGGHIYVAALLFVGGH
CCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCEECCCCHHHHHHCHHHHHHHHHHHCCC
FHIATKPWGWVRRAFIWNGEAYLSYALAGLSCCGFIATAYIWFNVTAYPSEFYGPSNAEA
EEEECCCHHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCHHHCCCCCCCH
SQAQSFTFLVRDQRLGANIGTAMGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPL
HHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEEEECCCCCHHHC
RGPNGLSLDKLQNDVQPWQVRRAAEYMTHAPNASINSVGGIITEPNSVNFVNLRQWLAGH
CCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEHHHHHHHHH
AFFLAWFTIVGHWFHAGRARAVAAGFEKGIDRKTEPALSMPDLD
HHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA