Click here to switch to the map view.

The map label for this gene is tdcF [C]

Identifier: 124022529

GI number: 124022529

Start: 746573

End: 746971

Strand: Reverse

Name: tdcF [C]

Synonym: P9303_08201

Alternate gene names: 124022529

Gene position: 746971-746573 (Counterclockwise)

Preceding gene: 124022531

Following gene: 124022527

Centisome position: 27.84

GC content: 54.89

Gene sequence:

>399_bases
ATGAACGCCCCTTCTGTGCAAGCAATCACAACAGCATCAGCTCCAGCACCAGTCGGCCCCTATAACCAGGCCGTACTAGC
AGGAGGATGGCTGTACTGCTCTGGTCAAATTGCCCTTGATCCAACCAACGGGGTGATGGTTGGGCAAGGTGATGTGGAAG
CTGAAACCCGCCAGGTCCTAAGCAATCTGATGGCTGTGCTCACAGCAGCCGGTGCTGAGCCAAGGCAAGTGATACGTACC
ACGGTTTACCTCACGGATCTAGCGGACTTTCAGAGGGTTAATGCTCTCTATGGCGAGATCTTCGGGGATGGCATCAGCCC
AGCAAGAGCATGTGTTCAAGTAGCTGCCCTCCCAAAAGGTGGTCGAGTGGAAATCGATTGCGTAGCTTGGCTCGGCTGA

Upstream 100 bases:

>100_bases
AGGCCGCTCGAACATGAACGAAGCGGCCTCACTCCCAGAGGATTTTCAACAGAAACAAAAGCTGACAGCGATGATGCACC
ATTAATGCTCAGAGCAGACC

Downstream 100 bases:

>100_bases
AAACAACCAGTGGAGACGTGAAGCACTTTGATCAATCGTGTAGCGACTCAAGAAAATCTTGTTCCTGTCCTCTTATCCCT
GACCTAGCAGGAGTTCTTCG

Product: translation initiation inhibitor, yjgF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MNAPSVQAITTASAPAPVGPYNQAVLAGGWLYCSGQIALDPTNGVMVGQGDVEAETRQVLSNLMAVLTAAGAEPRQVIRT
TVYLTDLADFQRVNALYGEIFGDGISPARACVQVAALPKGGRVEIDCVAWLG

Sequences:

>Translated_132_residues
MNAPSVQAITTASAPAPVGPYNQAVLAGGWLYCSGQIALDPTNGVMVGQGDVEAETRQVLSNLMAVLTAAGAEPRQVIRT
TVYLTDLADFQRVNALYGEIFGDGISPARACVQVAALPKGGRVEIDCVAWLG
>Mature_132_residues
MNAPSVQAITTASAPAPVGPYNQAVLAGGWLYCSGQIALDPTNGVMVGQGDVEAETRQVLSNLMAVLTAAGAEPRQVIRT
TVYLTDLADFQRVNALYGEIFGDGISPARACVQVAALPKGGRVEIDCVAWLG

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=126, Percent_Identity=48.4126984126984, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=42.4, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=39.2, Blast_Score=92, Evalue=1e-20,
Organism=Escherichia coli, GI1787245, Length=124, Percent_Identity=33.0645161290323, Blast_Score=74, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71982068, Length=126, Percent_Identity=52.3809523809524, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI71982075, Length=126, Percent_Identity=52.3809523809524, Blast_Score=114, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI25148896, Length=126, Percent_Identity=52.3809523809524, Blast_Score=114, Evalue=1e-26,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=31.404958677686, Blast_Score=78, Evalue=4e-16,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=32.3529411764706, Blast_Score=70, Evalue=1e-13,
Organism=Drosophila melanogaster, GI19921376, Length=126, Percent_Identity=45.2380952380952, Blast_Score=102, Evalue=6e-23,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13690; Mature: 13690

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPSVQAITTASAPAPVGPYNQAVLAGGWLYCSGQIALDPTNGVMVGQGDVEAETRQVL
CCCCCCEEEEECCCCCCCCCCCCEEEECCEEEECCEEEECCCCCEEECCCCCCHHHHHHH
SNLMAVLTAAGAEPRQVIRTTVYLTDLADFQRVNALYGEIFGDGISPARACVQVAALPKG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
GRVEIDCVAWLG
CCEEEEEEEECC
>Mature Secondary Structure
MNAPSVQAITTASAPAPVGPYNQAVLAGGWLYCSGQIALDPTNGVMVGQGDVEAETRQVL
CCCCCCEEEEECCCCCCCCCCCCEEEECCEEEECCEEEECCCCCEEECCCCCCHHHHHHH
SNLMAVLTAAGAEPRQVIRTTVYLTDLADFQRVNALYGEIFGDGISPARACVQVAALPKG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
GRVEIDCVAWLG
CCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7787182; 8590279; 8905231 [H]