| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
Click here to switch to the map view.
The map label for this gene is 124022226
Identifier: 124022226
GI number: 124022226
Start: 505361
End: 505837
Strand: Reverse
Name: 124022226
Synonym: P9303_05161
Alternate gene names: NA
Gene position: 505837-505361 (Counterclockwise)
Preceding gene: 124022231
Following gene: 124022223
Centisome position: 18.86
GC content: 50.94
Gene sequence:
>477_bases ATGGCAAAACAAGACCCTAACTACTGGTTGATGAAAAGCGAGCCCGATGCCTACGGCATCGACCACCTCAAAAAAGAAGG CAACACCCTATGGGATGGGATTCGCAACTACCAAGCACGCAATTTTATGCGTTCGATGCTCATAGGAGACAAGGCATTCT TTTATCACTCAAACTGCAAGCCTCCTGGAATCGTCGGGCTCATGGAGGTCATTGAAACCGGCCTGGTGGACCCCACACAA TTTGATCCAAAAGCCAAGTACTACGACCCGAAGTCATCACCAGACAAGCCGCGCTGGGATTGCGTTCGACTGCATTATCT CGGACGCTTCAGCGAACTCCTAAGTCTAGAAAGTCTGCGGGACAAATACAGCGCTGAGCAACTACCGGTGCTTCGCAAGG GCAATCGCCTCTCAATCTTGCCGATTCCCAAAAGCACTGCCAATGATCTGCTGCAATGGCTTGGACCACTCCACTAA
Upstream 100 bases:
>100_bases TCTATAGCTCGATTAGCTAGAAAGGTTCATAACGAATAAGACCCCGAGGAAGGGGGGCTAGCAAAACTTTATCCAAACCA CCACTTTCTTTTGAGATCCC
Downstream 100 bases:
>100_bases GCCTTCCTCAAAACCAATCACTAAAGAGCTGCTCTTGTCGTCAGACCAAATGCCAAGAACATCTCTGGTGCTCGAACCAC AAGCCAACTAACGACGCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 158; Mature: 157
Protein sequence:
>158_residues MAKQDPNYWLMKSEPDAYGIDHLKKEGNTLWDGIRNYQARNFMRSMLIGDKAFFYHSNCKPPGIVGLMEVIETGLVDPTQ FDPKAKYYDPKSSPDKPRWDCVRLHYLGRFSELLSLESLRDKYSAEQLPVLRKGNRLSILPIPKSTANDLLQWLGPLH
Sequences:
>Translated_158_residues MAKQDPNYWLMKSEPDAYGIDHLKKEGNTLWDGIRNYQARNFMRSMLIGDKAFFYHSNCKPPGIVGLMEVIETGLVDPTQ FDPKAKYYDPKSSPDKPRWDCVRLHYLGRFSELLSLESLRDKYSAEQLPVLRKGNRLSILPIPKSTANDLLQWLGPLH >Mature_157_residues AKQDPNYWLMKSEPDAYGIDHLKKEGNTLWDGIRNYQARNFMRSMLIGDKAFFYHSNCKPPGIVGLMEVIETGLVDPTQF DPKAKYYDPKSSPDKPRWDCVRLHYLGRFSELLSLESLRDKYSAEQLPVLRKGNRLSILPIPKSTANDLLQWLGPLH
Specific function: Unknown
COG id: COG2947
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI83267861, Length=154, Percent_Identity=42.8571428571429, Blast_Score=126, Evalue=1e-29, Organism=Homo sapiens, GI40806221, Length=154, Percent_Identity=42.8571428571429, Blast_Score=126, Evalue=1e-29, Organism=Homo sapiens, GI7661804, Length=154, Percent_Identity=42.8571428571429, Blast_Score=126, Evalue=1e-29, Organism=Homo sapiens, GI83267859, Length=104, Percent_Identity=49.0384615384615, Blast_Score=114, Evalue=3e-26, Organism=Homo sapiens, GI40806219, Length=104, Percent_Identity=49.0384615384615, Blast_Score=114, Evalue=3e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18255; Mature: 18124
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKQDPNYWLMKSEPDAYGIDHLKKEGNTLWDGIRNYQARNFMRSMLIGDKAFFYHSNCK CCCCCCCEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCC PPGIVGLMEVIETGLVDPTQFDPKAKYYDPKSSPDKPRWDCVRLHYLGRFSELLSLESLR CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DKYSAEQLPVLRKGNRLSILPIPKSTANDLLQWLGPLH HHHHHHHCCHHCCCCEEEEEECCCCCHHHHHHHHCCCC >Mature Secondary Structure AKQDPNYWLMKSEPDAYGIDHLKKEGNTLWDGIRNYQARNFMRSMLIGDKAFFYHSNCK CCCCCCEEEEECCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCC PPGIVGLMEVIETGLVDPTQFDPKAKYYDPKSSPDKPRWDCVRLHYLGRFSELLSLESLR CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DKYSAEQLPVLRKGNRLSILPIPKSTANDLLQWLGPLH HHHHHHHCCHHCCCCEEEEEECCCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA