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The map label for this gene is glcD [H]

Identifier: 123969034

GI number: 123969034

Start: 1285058

End: 1286410

Strand: Reverse

Name: glcD [H]

Synonym: A9601_15021

Alternate gene names: 123969034

Gene position: 1286410-1285058 (Counterclockwise)

Preceding gene: 123969035

Following gene: 123969030

Centisome position: 77.04

GC content: 33.7

Gene sequence:

>1353_bases
ATGATATCAAAACTTAAATTTATAGACAAATTTAGAGAAGTCAAAAACTTAGAGATTATTGAAAATAAATCCGATGTAAA
AAGACTTTCAAAAGATTTTTATAACTACTCTCCAATCCTTACTGAAAAATTAGACGAATGTATTGCTGATGTGGTGGTAA
GACCTAGTGATCACAAAGCGGTAAAAGAAGTAGCAGAAATTTGTTGGGAATTATCTATCCCACTTACTTTAAGGGGTTCA
GGTACGGGTAATTATGGACAAGCTGTCCCATTATTTAAAGGAGTTGTGATGCAGATGAGTCAATTTAATAAGTTAGAAGA
ATTTGATCCAGATACAGGCTTTGTAAAAGTACAATCTGGCTGTGTTATGGGAGATTTGAATAAACAATTAGATAAATATG
GGAGGGAATTGAGGTTACTTCCTAGTACTTGGAAAACTGCCACAATTGGAGGTTTTATTGCAGGTGGTTCAGGAGGTATT
GGTTCCATTAGATGGGGATTTTTAAGGGATCCAGGAAATCTTTTAGGTTTAGAGGCAGTAACGATGAATGAAAAACCTGA
ATTACTAAAATTTGATGCTGAAGAATCCGAACCTCTTAATCATGCTTATGGGACTAATGGAATAATTACTTCTTTATTAC
TTGCTACTGATATCAAACGTAAGTGGTACTCATTAGTTATCGACTGTATTGAATTTGAAAAAACAATAGAAATATTAAAA
ACTCTTACTAGCGCAGCAATTAATCTGAAATTAGGAGCAATTCTTGAAGAAGAAATTGTAGATCAAATGCCAAAATGGTT
TAAAGGTAAATCTAGAAGTCACAAGATATTAATACAATCTACCCTTGGAGGAATAAAAACCATCGAGCTTATTTGTAAAA
AATTTAAAGTTGAATCTACCTTACTTGGGGAAGAAGAAAAGCTCGTGAATGGAATTTCTGAAGTCGTATGGAATCATACA
ACTCTTCATATGAGGTCTAGGGATAAAAATTGGACGTATTTACAGATGCTTTTGCCACTTAATAATGAAATAGAATTAAT
TAATTTTTTGAGGAAAAAATGGGGTAAAAAAGTTCTTTGGCATTTAGAGGCAGTTTCACAACAAGGATCACCGCGATTAG
CGGCTTTGCCTGTTTTAAAGTGGAATGGGCCAGAAGAATTAAAAGAAATAATGGAAGATTGCAAGAAACTTGGTGCGTTT
ATTTTTAATCCTCATGTTTTAACAGTTGAAGGAGGAGGTCTCGGAGTGGTGGATGCAGATCAAGTAAAAGCGAAATTAAG
ATTTGATCCAAAAGGGCTATTAAATCCAGGGAAATTGGAAGGTTGGGAAGTAAGAGAACAATTTAAAATTTAG

Upstream 100 bases:

>100_bases
GCAGATGTTTTTTCGAGCAATTTAAAGAGAAAAGTATTTATAAACGGCGATTTACATTCCTAATTGGCTAATTTATATAC
AAATCATAAAAATTTTATTA

Downstream 100 bases:

>100_bases
AATTTCTGTTTATACGCAAATTTAATAAATTCAGCAACTAAAAAAATAGAACCTGTTACAACAGGATGATTAGGTGGCCA
TGTTTCCAGGGAAAATAAAT

Product: FAD/FMN-containing dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MISKLKFIDKFREVKNLEIIENKSDVKRLSKDFYNYSPILTEKLDECIADVVVRPSDHKAVKEVAEICWELSIPLTLRGS
GTGNYGQAVPLFKGVVMQMSQFNKLEEFDPDTGFVKVQSGCVMGDLNKQLDKYGRELRLLPSTWKTATIGGFIAGGSGGI
GSIRWGFLRDPGNLLGLEAVTMNEKPELLKFDAEESEPLNHAYGTNGIITSLLLATDIKRKWYSLVIDCIEFEKTIEILK
TLTSAAINLKLGAILEEEIVDQMPKWFKGKSRSHKILIQSTLGGIKTIELICKKFKVESTLLGEEEKLVNGISEVVWNHT
TLHMRSRDKNWTYLQMLLPLNNEIELINFLRKKWGKKVLWHLEAVSQQGSPRLAALPVLKWNGPEELKEIMEDCKKLGAF
IFNPHVLTVEGGGLGVVDADQVKAKLRFDPKGLLNPGKLEGWEVREQFKI

Sequences:

>Translated_450_residues
MISKLKFIDKFREVKNLEIIENKSDVKRLSKDFYNYSPILTEKLDECIADVVVRPSDHKAVKEVAEICWELSIPLTLRGS
GTGNYGQAVPLFKGVVMQMSQFNKLEEFDPDTGFVKVQSGCVMGDLNKQLDKYGRELRLLPSTWKTATIGGFIAGGSGGI
GSIRWGFLRDPGNLLGLEAVTMNEKPELLKFDAEESEPLNHAYGTNGIITSLLLATDIKRKWYSLVIDCIEFEKTIEILK
TLTSAAINLKLGAILEEEIVDQMPKWFKGKSRSHKILIQSTLGGIKTIELICKKFKVESTLLGEEEKLVNGISEVVWNHT
TLHMRSRDKNWTYLQMLLPLNNEIELINFLRKKWGKKVLWHLEAVSQQGSPRLAALPVLKWNGPEELKEIMEDCKKLGAF
IFNPHVLTVEGGGLGVVDADQVKAKLRFDPKGLLNPGKLEGWEVREQFKI
>Mature_450_residues
MISKLKFIDKFREVKNLEIIENKSDVKRLSKDFYNYSPILTEKLDECIADVVVRPSDHKAVKEVAEICWELSIPLTLRGS
GTGNYGQAVPLFKGVVMQMSQFNKLEEFDPDTGFVKVQSGCVMGDLNKQLDKYGRELRLLPSTWKTATIGGFIAGGSGGI
GSIRWGFLRDPGNLLGLEAVTMNEKPELLKFDAEESEPLNHAYGTNGIITSLLLATDIKRKWYSLVIDCIEFEKTIEILK
TLTSAAINLKLGAILEEEIVDQMPKWFKGKSRSHKILIQSTLGGIKTIELICKKFKVESTLLGEEEKLVNGISEVVWNHT
TLHMRSRDKNWTYLQMLLPLNNEIELINFLRKKWGKKVLWHLEAVSQQGSPRLAALPVLKWNGPEELKEIMEDCKKLGAF
IFNPHVLTVEGGGLGVVDADQVKAKLRFDPKGLLNPGKLEGWEVREQFKI

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=202, Percent_Identity=25.7425742574257, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI1789351, Length=199, Percent_Identity=26.6331658291457, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787977, Length=173, Percent_Identity=32.9479768786127, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17534361, Length=205, Percent_Identity=29.7560975609756, Blast_Score=76, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6320764, Length=198, Percent_Identity=26.2626262626263, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320023, Length=135, Percent_Identity=28.1481481481481, Blast_Score=71, Evalue=4e-13,
Organism=Drosophila melanogaster, GI18921117, Length=260, Percent_Identity=25.3846153846154, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639277, Length=260, Percent_Identity=25.3846153846154, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24639275, Length=260, Percent_Identity=25.3846153846154, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50741; Mature: 50741

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKLKFIDKFREVKNLEIIENKSDVKRLSKDFYNYSPILTEKLDECIADVVVRPSDHKA
CCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
VKEVAEICWELSIPLTLRGSGTGNYGQAVPLFKGVVMQMSQFNKLEEFDPDTGFVKVQSG
HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
CVMGDLNKQLDKYGRELRLLPSTWKTATIGGFIAGGSGGIGSIRWGFLRDPGNLLGLEAV
CEECHHHHHHHHHCCEEEECCCCCCCEECCCEEECCCCCCCCEEEEEECCCCCEEEEEEE
TMNEKPELLKFDAEESEPLNHAYGTNGIITSLLLATDIKRKWYSLVIDCIEFEKTIEILK
ECCCCCCCEEECCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTSAAINLKLGAILEEEIVDQMPKWFKGKSRSHKILIQSTLGGIKTIELICKKFKVEST
HHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
LLGEEEKLVNGISEVVWNHTTLHMRSRDKNWTYLQMLLPLNNEIELINFLRKKWGKKVLW
HCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHCHHHHH
HLEAVSQQGSPRLAALPVLKWNGPEELKEIMEDCKKLGAFIFNPHVLTVEGGGLGVVDAD
HHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEECCEEEEECCCCCCCCCHH
QVKAKLRFDPKGLLNPGKLEGWEVREQFKI
HHHEEEEECCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure
MISKLKFIDKFREVKNLEIIENKSDVKRLSKDFYNYSPILTEKLDECIADVVVRPSDHKA
CCCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
VKEVAEICWELSIPLTLRGSGTGNYGQAVPLFKGVVMQMSQFNKLEEFDPDTGFVKVQSG
HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
CVMGDLNKQLDKYGRELRLLPSTWKTATIGGFIAGGSGGIGSIRWGFLRDPGNLLGLEAV
CEECHHHHHHHHHCCEEEECCCCCCCEECCCEEECCCCCCCCEEEEEECCCCCEEEEEEE
TMNEKPELLKFDAEESEPLNHAYGTNGIITSLLLATDIKRKWYSLVIDCIEFEKTIEILK
ECCCCCCCEEECCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTSAAINLKLGAILEEEIVDQMPKWFKGKSRSHKILIQSTLGGIKTIELICKKFKVEST
HHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
LLGEEEKLVNGISEVVWNHTTLHMRSRDKNWTYLQMLLPLNNEIELINFLRKKWGKKVLW
HCCCHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHCHHHHH
HLEAVSQQGSPRLAALPVLKWNGPEELKEIMEDCKKLGAFIFNPHVLTVEGGGLGVVDAD
HHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCEEECCEEEEECCCCCCCCCHH
QVKAKLRFDPKGLLNPGKLEGWEVREQFKI
HHHEEEEECCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]