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The map label for this gene is cad [H]

Identifier: 123968723

GI number: 123968723

Start: 1005275

End: 1006672

Strand: Direct

Name: cad [H]

Synonym: A9601_11901

Alternate gene names: 123968723

Gene position: 1005275-1006672 (Clockwise)

Preceding gene: 123968720

Following gene: 123968724

Centisome position: 60.2

GC content: 30.83

Gene sequence:

>1398_bases
ATGAGCATTTCATCTTTTCTAACTAAAAAGTTTTTAAAGTCTTTATTCTTTCCCGCTCATAACAGAGGGGCAGCTTTACC
AAAGAAATTAGTGAAGTTGTTAAAAAATCCACCTGGGTATTGGGACTTGCCAGAACTACCAGAAATAGGCTCCCCACTAT
CCCAAATCGGATTAATTGCTAAATCTCAAAGAGAATTCTCAGACAAATTTGGAGCTAAAGGATGTTTCTTTGGAGTTAAT
GGAGCTTCCGGATTAATACAATCAGCAGTAATTGCAATGGCAAATCCGGGCGAAAATATCCTGATGCCTAGAAATGTTCA
TATAAGTGTCATAAAAATCTGTGCGATGCAGAATATAAATCCAATATTTTTTGACTTAGAATTTTCAACCATAACGGGTC
ATTACAAACCAATTACAAAAATTTGGTTGGAAAATGTATTTAAAAAATTAAATTTTGATGAGAATAAAATTGCAGGGGTT
ATTCTTGTAAGCCCCTCTTATCATGGTTATGCAGGAGATTTAGAGCCTTTAATAGATTGTTGTCATCAAAAAAATTTACC
TGTTTTAGTTGATGAAGCCCATGGTTCTTATTTACTTTTTTGTGAAAATCTTAATTTACCAAAACCGGCCTTATCATCAA
ACGCTGATTTAGTAGTTAATTCATTGCATAAGTCACTCAATGGATTAACTCAAACGGCGGTACTTTGGTACAAAGGGAAT
CTAATAAATGAATATAAATTAATCAAAAGTATTAATTTGCTTCAAACCACCAGTCCAAGTTCTTTATTACTTTCTTCTTG
TGAAGAGTCTATAAGGGACTGGCTTAACAAAAAAAGTTTATCAAAATATCAAAAAAGAATTTTAGAGGCAAAAAATATTT
ATAAAAAATTAATTCAAAAAAATATTCCTCTCATAGAAACTCAAGACCCCTTAAAAATTGTATTAAATACCTCTAAGGCT
GGGATTGATGGTTTTACTGCTGATAATTTTTTTTATAGAAATGGACTTATTGCAGAATTACCGGAAATGATGACTCTTAC
TTTTTGCTTAGGATTTGGAAATCAAAAAGATTTTCTTAATTTATTTGAAAAATTATGGAAAAAATTACTATTAAATTCCA
AAAAATCAAAAAGTTTAAAAGTGCTCAGATCACCCTTTAAATTAGTTCAAGCTCCCGAAATCGAAATTGGAATTGCTTTG
AGAAGTAAGAGTCAGAATATTCCTTTCTCACAATCATTAAATAAAATATCTGGAGATATTATTTGCCCTTATCCTCCTGG
GATACCTTTACTAGTTCCTGGCGAAAAAATTGATTTAGATAGGTTTAATTGGATAAATAATCAAAGTTTATGCAACAAGG
ATCTGGTAAATTTTAATATAAGAGTCTTAGAAACATAG

Upstream 100 bases:

>100_bases
TTCTTTTGCTGAATATTCCGAATAAGATCTTTTCATTAAAGTTAAAAAATATCAAAAAAGATTACCATGTAGTCCATTCT
ATATATGTCAATAATACTTT

Downstream 100 bases:

>100_bases
CAATTTCATATGAGATTAAGAAGCGGTCTACTTATAGGAATTTTTGGTTTAATTGTTGTTTTGATGGGGGGATGGTTTTT
TACATTGGCAACTGCGATGC

Product: Orn/Lys/Arg decarboxylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MSISSFLTKKFLKSLFFPAHNRGAALPKKLVKLLKNPPGYWDLPELPEIGSPLSQIGLIAKSQREFSDKFGAKGCFFGVN
GASGLIQSAVIAMANPGENILMPRNVHISVIKICAMQNINPIFFDLEFSTITGHYKPITKIWLENVFKKLNFDENKIAGV
ILVSPSYHGYAGDLEPLIDCCHQKNLPVLVDEAHGSYLLFCENLNLPKPALSSNADLVVNSLHKSLNGLTQTAVLWYKGN
LINEYKLIKSINLLQTTSPSSLLLSSCEESIRDWLNKKSLSKYQKRILEAKNIYKKLIQKNIPLIETQDPLKIVLNTSKA
GIDGFTADNFFYRNGLIAELPEMMTLTFCLGFGNQKDFLNLFEKLWKKLLLNSKKSKSLKVLRSPFKLVQAPEIEIGIAL
RSKSQNIPFSQSLNKISGDIICPYPPGIPLLVPGEKIDLDRFNWINNQSLCNKDLVNFNIRVLET

Sequences:

>Translated_465_residues
MSISSFLTKKFLKSLFFPAHNRGAALPKKLVKLLKNPPGYWDLPELPEIGSPLSQIGLIAKSQREFSDKFGAKGCFFGVN
GASGLIQSAVIAMANPGENILMPRNVHISVIKICAMQNINPIFFDLEFSTITGHYKPITKIWLENVFKKLNFDENKIAGV
ILVSPSYHGYAGDLEPLIDCCHQKNLPVLVDEAHGSYLLFCENLNLPKPALSSNADLVVNSLHKSLNGLTQTAVLWYKGN
LINEYKLIKSINLLQTTSPSSLLLSSCEESIRDWLNKKSLSKYQKRILEAKNIYKKLIQKNIPLIETQDPLKIVLNTSKA
GIDGFTADNFFYRNGLIAELPEMMTLTFCLGFGNQKDFLNLFEKLWKKLLLNSKKSKSLKVLRSPFKLVQAPEIEIGIAL
RSKSQNIPFSQSLNKISGDIICPYPPGIPLLVPGEKIDLDRFNWINNQSLCNKDLVNFNIRVLET
>Mature_464_residues
SISSFLTKKFLKSLFFPAHNRGAALPKKLVKLLKNPPGYWDLPELPEIGSPLSQIGLIAKSQREFSDKFGAKGCFFGVNG
ASGLIQSAVIAMANPGENILMPRNVHISVIKICAMQNINPIFFDLEFSTITGHYKPITKIWLENVFKKLNFDENKIAGVI
LVSPSYHGYAGDLEPLIDCCHQKNLPVLVDEAHGSYLLFCENLNLPKPALSSNADLVVNSLHKSLNGLTQTAVLWYKGNL
INEYKLIKSINLLQTTSPSSLLLSSCEESIRDWLNKKSLSKYQKRILEAKNIYKKLIQKNIPLIETQDPLKIVLNTSKAG
IDGFTADNFFYRNGLIAELPEMMTLTFCLGFGNQKDFLNLFEKLWKKLLLNSKKSKSLKVLRSPFKLVQAPEIEIGIALR
SKSQNIPFSQSLNKISGDIICPYPPGIPLLVPGEKIDLDRFNWINNQSLCNKDLVNFNIRVLET

Specific function: Catalyzes the formation of agmatine from arginine [H]

COG id: COG1982

COG function: function code E; Arginine/lysine/ornithine decarboxylases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000310
- InterPro:   IPR008286
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C [H]

EC number: =4.1.1.19 [H]

Molecular weight: Translated: 52126; Mature: 51994

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS00703 OKR_DC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISSFLTKKFLKSLFFPAHNRGAALPKKLVKLLKNPPGYWDLPELPEIGSPLSQIGLIA
CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
KSQREFSDKFGAKGCFFGVNGASGLIQSAVIAMANPGENILMPRNVHISVIKICAMQNIN
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHCCCC
PIFFDLEFSTITGHYKPITKIWLENVFKKLNFDENKIAGVILVSPSYHGYAGDLEPLIDC
EEEEEEEEHEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
CHQKNLPVLVDEAHGSYLLFCENLNLPKPALSSNADLVVNSLHKSLNGLTQTAVLWYKGN
HCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECC
LINEYKLIKSINLLQTTSPSSLLLSSCEESIRDWLNKKSLSKYQKRILEAKNIYKKLIQK
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIPLIETQDPLKIVLNTSKAGIDGFTADNFFYRNGLIAELPEMMTLTFCLGFGNQKDFLN
CCCEEECCCCEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCHHHHHH
LFEKLWKKLLLNSKKSKSLKVLRSPFKLVQAPEIEIGIALRSKSQNIPFSQSLNKISGDI
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHCCCE
ICPYPPGIPLLVPGEKIDLDRFNWINNQSLCNKDLVNFNIRVLET
ECCCCCCCCEEECCCEECCHHHCCCCCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure 
SISSFLTKKFLKSLFFPAHNRGAALPKKLVKLLKNPPGYWDLPELPEIGSPLSQIGLIA
CHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
KSQREFSDKFGAKGCFFGVNGASGLIQSAVIAMANPGENILMPRNVHISVIKICAMQNIN
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHCCCC
PIFFDLEFSTITGHYKPITKIWLENVFKKLNFDENKIAGVILVSPSYHGYAGDLEPLIDC
EEEEEEEEHEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
CHQKNLPVLVDEAHGSYLLFCENLNLPKPALSSNADLVVNSLHKSLNGLTQTAVLWYKGN
HCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEEECC
LINEYKLIKSINLLQTTSPSSLLLSSCEESIRDWLNKKSLSKYQKRILEAKNIYKKLIQK
CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIPLIETQDPLKIVLNTSKAGIDGFTADNFFYRNGLIAELPEMMTLTFCLGFGNQKDFLN
CCCEEECCCCEEEEEECCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCHHHHHH
LFEKLWKKLLLNSKKSKSLKVLRSPFKLVQAPEIEIGIALRSKSQNIPFSQSLNKISGDI
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHCCCE
ICPYPPGIPLLVPGEKIDLDRFNWINNQSLCNKDLVNFNIRVLET
ECCCCCCCCEEECCCEECCHHHCCCCCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]