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The map label for this gene is dppB [H]

Identifier: 123968686

GI number: 123968686

Start: 968525

End: 969547

Strand: Reverse

Name: dppB [H]

Synonym: A9601_11531

Alternate gene names: 123968686

Gene position: 969547-968525 (Counterclockwise)

Preceding gene: 123968687

Following gene: 123968684

Centisome position: 58.06

GC content: 32.65

Gene sequence:

>1023_bases
ATGAGTAGAAATTTAGATAAACTACTAAATTATTCCTTATTGAAAATTTCATTAATACCGATAATGTTATGGATAATTTC
TTCATTAGTTTTTATTTTATTAAGAATTGCTCCCGGCGATCCTGTAGATGCCATACTTGGATCTGGTGCAGATGAGGTTT
CCAGGGAATTTCTAAGAAATAAATTGGGGCTAAATGAACCTTTAATAAATCAATATTTTTCATATATTAAAAATATATTG
CACTTAGATTTTGGCCAATCTCTTAGTACCCAAGAGCCAGTCCTTAATATTATTATAAAGTCGTTGCCTGCAAGTCTTGA
GCTTGGATTCTTTTCAATATTAAGTGCCACACTAATAGGATTTCCATTGGGATTAATTGGCTTAAGAAATAGAGGTAAAA
AGACTGATTATATTGCGAGAATATTAGGAATTGCCACATATGCGATCCCTCCTTTTTGGGGTGCAATGTTAGCTCAATTA
TTATTTTCTGTATTTTTTAATATTTCCCCAATTGGAGGGAGATTTCCTATATTTCAGCAACAACCCCAAATTACAGGTTT
TCTAGTTTTAGATAGTATTCTTTCAAATAATATTATTGCCTTGAAAGATAGTCTTTATCATCTCGCACTTCCTTCGATTA
CCCTTGGCTTTTTATTAAGTGGTATATTCAGCCGCTCATTAAGAGTAAATTTGGATAAGACATTAAAAAGTGATTATGTA
AATGCTGCTATATGTAGAGGAATATCGAGGAAAAAAATATTTTTAAACCATGCATTGCCTAATGCTCTATTGCCAATTGT
CACTATTTCTGGCTTGACTATGGCCTCTTTAGCAGGAGGTGCTCTTTTGTTCGAGGTGACTTTCTCATGGCCAGGTATAG
CTTTAAGATTACATGAAGCTATTTCTCAAAGAGACTATACTTTGGTTCAAGGAATTGTAATTTTTACCTCTATGCTTATA
GTCTCTCTAAATCTCTTAGTGGATATTTTAATCGCATATTTAGATCCACGAATAGAGTACTAA

Upstream 100 bases:

>100_bases
ATTTGGATCTCCTCTCAAAAAGCATGGTCACAAAATAAAATATCAAAACCTATTTTTAATGGTGCAGGAATAATCTCATT
GAGTGATCTTGAGTTAATTA

Downstream 100 bases:

>100_bases
TTTTCGGAAATTTCTTTTATCGTTTCAAGATCTAAAAAATGGAAGTCAAGTCCCAAATCTCTTTGGTTTTTAACTACATT
AGGGATCTTTTGGTCTTTAA

Product: putative ABC transporter, oligopeptides

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MSRNLDKLLNYSLLKISLIPIMLWIISSLVFILLRIAPGDPVDAILGSGADEVSREFLRNKLGLNEPLINQYFSYIKNIL
HLDFGQSLSTQEPVLNIIIKSLPASLELGFFSILSATLIGFPLGLIGLRNRGKKTDYIARILGIATYAIPPFWGAMLAQL
LFSVFFNISPIGGRFPIFQQQPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
NAAICRGISRKKIFLNHALPNALLPIVTISGLTMASLAGGALLFEVTFSWPGIALRLHEAISQRDYTLVQGIVIFTSMLI
VSLNLLVDILIAYLDPRIEY

Sequences:

>Translated_340_residues
MSRNLDKLLNYSLLKISLIPIMLWIISSLVFILLRIAPGDPVDAILGSGADEVSREFLRNKLGLNEPLINQYFSYIKNIL
HLDFGQSLSTQEPVLNIIIKSLPASLELGFFSILSATLIGFPLGLIGLRNRGKKTDYIARILGIATYAIPPFWGAMLAQL
LFSVFFNISPIGGRFPIFQQQPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
NAAICRGISRKKIFLNHALPNALLPIVTISGLTMASLAGGALLFEVTFSWPGIALRLHEAISQRDYTLVQGIVIFTSMLI
VSLNLLVDILIAYLDPRIEY
>Mature_339_residues
SRNLDKLLNYSLLKISLIPIMLWIISSLVFILLRIAPGDPVDAILGSGADEVSREFLRNKLGLNEPLINQYFSYIKNILH
LDFGQSLSTQEPVLNIIIKSLPASLELGFFSILSATLIGFPLGLIGLRNRGKKTDYIARILGIATYAIPPFWGAMLAQLL
FSVFFNISPIGGRFPIFQQQPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYVN
AAICRGISRKKIFLNHALPNALLPIVTISGLTMASLAGGALLFEVTFSWPGIALRLHEAISQRDYTLVQGIVIFTSMLIV
SLNLLVDILIAYLDPRIEY

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=319, Percent_Identity=34.7962382445141, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1787761, Length=314, Percent_Identity=36.624203821656, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1787053, Length=334, Percent_Identity=31.7365269461078, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1789888, Length=335, Percent_Identity=31.3432835820896, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=31.25, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=28.8819875776398, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1788504, Length=381, Percent_Identity=26.509186351706, Blast_Score=114, Evalue=9e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37573; Mature: 37442

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRNLDKLLNYSLLKISLIPIMLWIISSLVFILLRIAPGDPVDAILGSGADEVSREFLRN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHH
KLGLNEPLINQYFSYIKNILHLDFGQSLSTQEPVLNIIIKSLPASLELGFFSILSATLIG
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FPLGLIGLRNRGKKTDYIARILGIATYAIPPFWGAMLAQLLFSVFFNISPIGGRFPIFQQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
CCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHH
NAAICRGISRKKIFLNHALPNALLPIVTISGLTMASLAGGALLFEVTFSWPGIALRLHEA
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCEEEEEEEECCCCHHHHHHHH
ISQRDYTLVQGIVIFTSMLIVSLNLLVDILIAYLDPRIEY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SRNLDKLLNYSLLKISLIPIMLWIISSLVFILLRIAPGDPVDAILGSGADEVSREFLRN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHH
KLGLNEPLINQYFSYIKNILHLDFGQSLSTQEPVLNIIIKSLPASLELGFFSILSATLIG
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
FPLGLIGLRNRGKKTDYIARILGIATYAIPPFWGAMLAQLLFSVFFNISPIGGRFPIFQQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
QPQITGFLVLDSILSNNIIALKDSLYHLALPSITLGFLLSGIFSRSLRVNLDKTLKSDYV
CCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHH
NAAICRGISRKKIFLNHALPNALLPIVTISGLTMASLAGGALLFEVTFSWPGIALRLHEA
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCHHHHHHCCCEEEEEEEECCCCHHHHHHHH
ISQRDYTLVQGIVIFTSMLIVSLNLLVDILIAYLDPRIEY
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]