| Definition | Prochlorococcus marinus str. AS9601, complete genome. |
|---|---|
| Accession | NC_008816 |
| Length | 1,669,886 |
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The map label for this gene is rsbW
Identifier: 123968470
GI number: 123968470
Start: 806613
End: 807047
Strand: Direct
Name: rsbW
Synonym: A9601_09371
Alternate gene names: NA
Gene position: 806613-807047 (Clockwise)
Preceding gene: 123968469
Following gene: 123968474
Centisome position: 48.3
GC content: 28.05
Gene sequence:
>435_bases ATGTCCTTATTCCGGGGCAAAAATATTTTAAAAAGATTTTTTAAAAGACCAAAAATTGACTGGTCAAACTACGAATTCGA ATCATCATTACAATTAAATGAATTTGTCGATCAATTATTAGAACCTATTAAAAATACTCAATCAAGCTATCTTATAAAAC TTGGTTTACATGAAGCTCTAGTTAATGCAGTAAAACATGGAAATAAATTAGATCCTAAAAAAAATATTAGAGTAAGAAGA ATAATTACTCCTAATTGGTGTGTTTGGCAAATTCAAGATCAAGGTAATGGTTTAGAAATAAAAAAAAGAGACTACACATT ACCAAAAAAAATAAATAGTGTAAATGGGCGTGGCCTATACATTATTAATGAATGTTTTGATGATATTAGATGGAGTAGTA AAGGTAATAGGCTTCAGTTGGCTTTAAAAAGGTGA
Upstream 100 bases:
>100_bases CTCCATCCTACGGCATCCTGCTATTGCGAAGAGACACAATAATATTCTTTAAAATGAGGTATTTAATAAGTTAAAATTAA GATAGTGTAAAAATATTATT
Downstream 100 bases:
>100_bases TTTTTACTAGGGCAAGGTTGATCTACGTTTATTTCTTTTAACCATTTAACACTTTCTTCTATATACTCAATAGATTCCTT TTCATTGCAAGAAATAATTA
Product: anti-sigma regulatory factor (Ser/Thr protein kinase)
Products: NA
Alternate protein names: PmgA Protein; Photomixotrophic Growth Related Protein PmgA-Like Protein; Photomixotrophic Growth-Like Protein PmgA; Photomixotrophic Growth Related Protein
Number of amino acids: Translated: 144; Mature: 143
Protein sequence:
>144_residues MSLFRGKNILKRFFKRPKIDWSNYEFESSLQLNEFVDQLLEPIKNTQSSYLIKLGLHEALVNAVKHGNKLDPKKNIRVRR IITPNWCVWQIQDQGNGLEIKKRDYTLPKKINSVNGRGLYIINECFDDIRWSSKGNRLQLALKR
Sequences:
>Translated_144_residues MSLFRGKNILKRFFKRPKIDWSNYEFESSLQLNEFVDQLLEPIKNTQSSYLIKLGLHEALVNAVKHGNKLDPKKNIRVRR IITPNWCVWQIQDQGNGLEIKKRDYTLPKKINSVNGRGLYIINECFDDIRWSSKGNRLQLALKR >Mature_143_residues SLFRGKNILKRFFKRPKIDWSNYEFESSLQLNEFVDQLLEPIKNTQSSYLIKLGLHEALVNAVKHGNKLDPKKNIRVRRI ITPNWCVWQIQDQGNGLEIKKRDYTLPKKINSVNGRGLYIINECFDDIRWSSKGNRLQLALKR
Specific function: Unknown
COG id: COG2172
COG function: function code T; Anti-sigma regulatory factor (Ser/Thr protein kinase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17001; Mature: 16870
Theoretical pI: Translated: 10.66; Mature: 10.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLFRGKNILKRFFKRPKIDWSNYEFESSLQLNEFVDQLLEPIKNTQSSYLIKLGLHEAL CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHH VNAVKHGNKLDPKKNIRVRRIITPNWCVWQIQDQGNGLEIKKRDYTLPKKINSVNGRGLY HHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEECCCCCCCHHHCCCCCCEEE IINECFDDIRWSSKGNRLQLALKR EHHHHHHHHHCCCCCCEEEEEECC >Mature Secondary Structure SLFRGKNILKRFFKRPKIDWSNYEFESSLQLNEFVDQLLEPIKNTQSSYLIKLGLHEAL CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHH VNAVKHGNKLDPKKNIRVRRIITPNWCVWQIQDQGNGLEIKKRDYTLPKKINSVNGRGLY HHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCEEEECCCCCCCHHHCCCCCCEEE IINECFDDIRWSSKGNRLQLALKR EHHHHHHHHHCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA