BacMap

Definition	Prochlorococcus marinus str. AS9601, complete genome.
Accession	NC_008816
Length	1,669,886

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The map label for this gene is ymeB [H]

Identifier: 123968404

GI number: 123968404

Start: 753496

End: 754284

Strand: Reverse

Name: ymeB [H]

Synonym: A9601_08711

Alternate gene names: 123968404

Gene position: 754284-753496 (Counterclockwise)

Preceding gene: 123968405

Following gene: 123968403

Centisome position: 45.17

GC content: 23.83

Gene sequence:

>789_bases
GTGTTTAATAAATTTTGGTTTGAGGCAAAAAATATAAATTGTTTTAAAAATGGCTTTGAAGTAATTAAAGATTTAAATTT
AAAGATAACGTATTCAGAAAATGTCATATTAATTGGACCAAATGGTTCAGGTAAATCATCATTAATAGAAGTAATTAATA
GAAACATATACCCAGTAATAACTAATGATTCGAAACTGAAAATATTTGACAAAGAACTTATAAATTTATGGGAACTAAGA
AAGAGAATAAGTACCGTAAATAATGATATAAAAAATAGAATAAATCCAAATCTACAAGTTTTTGATTTAATTTTAAGTGG
ACTATATGGAAGATATTGTTATATACAAAATAAATCAGAAAGAGATTCTTACAAAGTAGAAAAAATTATGAAGAAAATGA
ATATGTCTAATTTATCAAAAAAATATTTTTCCTATTTATCTGATGGAGAAAAACAAATTTCTCTGATTGCTAGGGCGTTA
ATCAAAAAACCGGATATATTAATCCTAGATGAACCAATTGCAAATTTAGACTATAAATCAAAGTTTTTTGTAATTGATAA
AATTAATGAATTATCAAAATTAAAAACTAAAATTTTATGCGTAACTCATGATATTTCAACAATTACAAAAATTTATGACA
GGGTCATAATGTTAAAAGATGGCAGGATAATCGCTGATGGGGAGCAAAATAAGGTTATAAATAGTGACAATCTTAATAAG
TTATATGGTATTGATGTAGAGGTAACTAAAAATAATGGACTTTGGAATATAAAGAGATTATCTAAATAA

Upstream 100 bases:

>100_bases
TGAAGAAAGTAAATAGACCTTCATGGTTGAATTGGCTTTATCTTTTTATATTTATTTTAAGCTCAATTCAATTGATTATA
TTTTGGAGCAATAAGTTTTA

Downstream 100 bases:

>100_bases
CAATTATAAAAATAACTATCGCAATAGCAAGAAATACTAATTTTTTACTTTTTAAAAATGAAGAGGATTTATTTTTAAAT
AAGGAAGATCCACATTTAGA

Product: ABC transporter ATPase

Products: ADP; phosphate; L-arginine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MFNKFWFEAKNINCFKNGFEVIKDLNLKITYSENVILIGPNGSGKSSLIEVINRNIYPVITNDSKLKIFDKELINLWELR
KRISTVNNDIKNRINPNLQVFDLILSGLYGRYCYIQNKSERDSYKVEKIMKKMNMSNLSKKYFSYLSDGEKQISLIARAL
IKKPDILILDEPIANLDYKSKFFVIDKINELSKLKTKILCVTHDISTITKIYDRVIMLKDGRIIADGEQNKVINSDNLNK
LYGIDVEVTKNNGLWNIKRLSK

Sequences:

>Translated_262_residues
MFNKFWFEAKNINCFKNGFEVIKDLNLKITYSENVILIGPNGSGKSSLIEVINRNIYPVITNDSKLKIFDKELINLWELR
KRISTVNNDIKNRINPNLQVFDLILSGLYGRYCYIQNKSERDSYKVEKIMKKMNMSNLSKKYFSYLSDGEKQISLIARAL
IKKPDILILDEPIANLDYKSKFFVIDKINELSKLKTKILCVTHDISTITKIYDRVIMLKDGRIIADGEQNKVINSDNLNK
LYGIDVEVTKNNGLWNIKRLSK
>Mature_262_residues
MFNKFWFEAKNINCFKNGFEVIKDLNLKITYSENVILIGPNGSGKSSLIEVINRNIYPVITNDSKLKIFDKELINLWELR
KRISTVNNDIKNRINPNLQVFDLILSGLYGRYCYIQNKSERDSYKVEKIMKKMNMSNLSKKYFSYLSDGEKQISLIARAL
IKKPDILILDEPIANLDYKSKFFVIDKINELSKLKTKILCVTHDISTITKIYDRVIMLKDGRIIADGEQNKVINSDNLNK
LYGIDVEVTKNNGLWNIKRLSK

Specific function: Part Of The Binding-Protein-Dependent Transport System For Arginine. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: COG1119

COG function: function code P; ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI255708477, Length=228, Percent_Identity=31.140350877193, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI9955968, Length=231, Percent_Identity=24.2424242424242, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI9955966, Length=231, Percent_Identity=24.2424242424242, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI45243524, Length=231, Percent_Identity=24.2424242424242, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI171184400, Length=229, Percent_Identity=27.0742358078603, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI42741659, Length=232, Percent_Identity=29.7413793103448, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI9961250, Length=225, Percent_Identity=27.5555555555556, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4505771, Length=225, Percent_Identity=27.5555555555556, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI9961252, Length=225, Percent_Identity=27.5555555555556, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI148612844, Length=223, Percent_Identity=26.457399103139, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=28, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786803, Length=231, Percent_Identity=25.974025974026, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1786345, Length=248, Percent_Identity=25, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787029, Length=240, Percent_Identity=28.75, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787370, Length=221, Percent_Identity=29.8642533936652, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1789672, Length=229, Percent_Identity=26.6375545851528, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788225, Length=229, Percent_Identity=27.0742358078603, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790739, Length=240, Percent_Identity=23.3333333333333, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788506, Length=223, Percent_Identity=27.3542600896861, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1790544, Length=244, Percent_Identity=26.6393442622951, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1789032, Length=229, Percent_Identity=28.82096069869, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788761, Length=210, Percent_Identity=28.5714285714286, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786872, Length=226, Percent_Identity=29.2035398230088, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788450, Length=222, Percent_Identity=26.5765765765766, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787712, Length=220, Percent_Identity=26.3636363636364, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787500, Length=235, Percent_Identity=25.1063829787234, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786975, Length=207, Percent_Identity=27.0531400966184, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790467, Length=213, Percent_Identity=28.169014084507, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786253, Length=233, Percent_Identity=24.8927038626609, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787547, Length=244, Percent_Identity=25.4098360655738, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082267, Length=203, Percent_Identity=27.5862068965517, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081709, Length=230, Percent_Identity=27.3913043478261, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787164, Length=211, Percent_Identity=27.0142180094787, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787143, Length=235, Percent_Identity=29.3617021276596, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789593, Length=235, Percent_Identity=25.1063829787234, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788165, Length=202, Percent_Identity=27.2277227722772, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI48994883, Length=223, Percent_Identity=26.9058295964126, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081834, Length=242, Percent_Identity=25.6198347107438, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789991, Length=243, Percent_Identity=25.5144032921811, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789864, Length=240, Percent_Identity=23.3333333333333, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787758, Length=219, Percent_Identity=22.8310502283105, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789873, Length=222, Percent_Identity=26.1261261261261, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787759, Length=258, Percent_Identity=23.2558139534884, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=27.2300469483568, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786319, Length=220, Percent_Identity=23.6363636363636, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786398, Length=233, Percent_Identity=26.6094420600858, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789963, Length=232, Percent_Identity=22.8448275862069, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788210, Length=234, Percent_Identity=24.7863247863248, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=24.6636771300448, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789586, Length=226, Percent_Identity=26.1061946902655, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48995001, Length=227, Percent_Identity=21.5859030837004, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789962, Length=212, Percent_Identity=24.5283018867925, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788644, Length=188, Percent_Identity=25.531914893617, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=224, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17558664, Length=219, Percent_Identity=28.7671232876712, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17541710, Length=224, Percent_Identity=28.125, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71992290, Length=230, Percent_Identity=28.2608695652174, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI212646699, Length=223, Percent_Identity=25.5605381165919, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17565938, Length=229, Percent_Identity=27.0742358078603, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=242, Percent_Identity=26.0330578512397, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193211017, Length=242, Percent_Identity=26.0330578512397, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17543740, Length=237, Percent_Identity=28.2700421940928, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI115535101, Length=232, Percent_Identity=28.0172413793103, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=226, Percent_Identity=27.4336283185841, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17551702, Length=226, Percent_Identity=27.8761061946903, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=228, Percent_Identity=27.6315789473684, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI71996809, Length=242, Percent_Identity=25.6198347107438, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17551700, Length=226, Percent_Identity=27.8761061946903, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=235, Percent_Identity=25.9574468085106, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=234, Percent_Identity=31.6239316239316, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=233, Percent_Identity=26.1802575107296, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17511077, Length=235, Percent_Identity=25.9574468085106, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193209740, Length=231, Percent_Identity=26.8398268398268, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=224, Percent_Identity=27.2321428571429, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=227, Percent_Identity=30.3964757709251, Blast_Score=75, Evalue=9e-15,
Organism=Saccharomyces cerevisiae, GI6323217, Length=241, Percent_Identity=29.045643153527, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322980, Length=221, Percent_Identity=25.3393665158371, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321720, Length=217, Percent_Identity=26.7281105990783, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6320339, Length=243, Percent_Identity=27.9835390946502, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321752, Length=222, Percent_Identity=27.4774774774775, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322957, Length=223, Percent_Identity=24.6636771300448, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI85726357, Length=221, Percent_Identity=31.2217194570136, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI17136662, Length=223, Percent_Identity=30.0448430493274, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI281363262, Length=243, Percent_Identity=30.4526748971193, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24653245, Length=243, Percent_Identity=30.4526748971193, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24641565, Length=226, Percent_Identity=28.7610619469027, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24659289, Length=227, Percent_Identity=28.1938325991189, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI23397593, Length=226, Percent_Identity=28.7610619469027, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24585091, Length=224, Percent_Identity=26.3392857142857, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI19920532, Length=219, Percent_Identity=24.6575342465753, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24580930, Length=219, Percent_Identity=24.6575342465753, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI45551501, Length=229, Percent_Identity=27.9475982532751, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21357851, Length=229, Percent_Identity=27.9475982532751, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45551502, Length=229, Percent_Identity=27.9475982532751, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574533, Length=215, Percent_Identity=23.7209302325581, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85816269, Length=219, Percent_Identity=23.2876712328767, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580553, Length=219, Percent_Identity=23.2876712328767, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85724864, Length=218, Percent_Identity=23.394495412844, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580555, Length=218, Percent_Identity=23.394495412844, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 30445; Mature: 30445

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNKFWFEAKNINCFKNGFEVIKDLNLKITYSENVILIGPNGSGKSSLIEVINRNIYPVI
CCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCHHHHHHHHCCCCEEEE
TNDSKLKIFDKELINLWELRKRISTVNNDIKNRINPNLQVFDLILSGLYGRYCYIQNKSE
ECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCC
RDSYKVEKIMKKMNMSNLSKKYFSYLSDGEKQISLIARALIKKPDILILDEPIANLDYKS
CHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
KFFVIDKINELSKLKTKILCVTHDISTITKIYDRVIMLKDGRIIADGEQNKVINSDNLNK
EEEEEECHHHHHHHHHEEEEEECCHHHHHHHHHHEEEEECCEEEECCCCCCEECCCCCCE
LYGIDVEVTKNNGLWNIKRLSK
EEEEEEEEECCCCEEEEHCCCC
>Mature Secondary Structure
MFNKFWFEAKNINCFKNGFEVIKDLNLKITYSENVILIGPNGSGKSSLIEVINRNIYPVI
CCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCEEEECCCCCCHHHHHHHHCCCCEEEE
TNDSKLKIFDKELINLWELRKRISTVNNDIKNRINPNLQVFDLILSGLYGRYCYIQNKSE
ECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCCC
RDSYKVEKIMKKMNMSNLSKKYFSYLSDGEKQISLIARALIKKPDILILDEPIANLDYKS
CHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC
KFFVIDKINELSKLKTKILCVTHDISTITKIYDRVIMLKDGRIIADGEQNKVINSDNLNK
EEEEEECHHHHHHHHHEEEEEECCHHHHHHHHHHEEEEECCEEEECCCCCCEECCCCCCE
LYGIDVEVTKNNGLWNIKRLSK
EEEEEEEEECCCCEEEEHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-arginine [Periplasm]; H2O [C]

Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1400210; 11337471 [H]