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The map label for this gene is pcbA [H]

Identifier: 123968218

GI number: 123968218

Start: 606573

End: 607631

Strand: Direct

Name: pcbA [H]

Synonym: A9601_06831

Alternate gene names: 123968218

Gene position: 606573-607631 (Clockwise)

Preceding gene: 123968217

Following gene: 123968219

Centisome position: 36.32

GC content: 39.38

Gene sequence:

>1059_bases
ATGCAAACCTATGGAAATCCAGATACTACCTATGGATGGTGGGCTGGTAATTCAGGTGTAGCAAATCGCTCAGGAAAATT
CATTGCTGCTCATGTAGCTCATGCAGGATTAATTGTTTTCTGGGCGGGTGCATTCACCCTTTTTGAACTTTCACGATTTG
ACCCAAGCGTCCCAATGGGTCATCAACCTCTAATCGTTCTTCCTCACTTAGCAACTCTTGGAATAGGGTTTGATGCTAAT
GGTGTTGCGATGGGAGATACTAAACCTGTTCTAGCGATAGCAATAGTTCACTTAGTTTCTTCTATGGTTTTAGCAGCCGG
AGGACTTTTACACTCTTTACTTCTTCCTGGAAATCTAGAAGATTCTGATGTAGCAAGAGCTAGAAAATTCAATATTGAAT
GGGATAATCCAGACAAATTGACATTTATTCTTGGTCACCATCTAATTATTCTTGGTTTCGCAGTTATTGCTTTTGTCGAA
TGGGCAAGAGTGCATGGAATTTATGATCCAGCTATTGGTTCTGTAAGACAGGTTGAGTATGAATTAAATTTGGCCAAAAT
TTGGAATCACCAAACAGACTTTTTGACTATTGATAGCCTTGAAGAAGTAATGGGAGGTCATGCTTTCCTCGCTTTCGTTG
AGATCACTGGTGGTGCTTGGCATATTGCTACTAAGCAAGTTGGTGAATATACCAAATTCAAAGGTAAAGGACTTCTCTCT
GCAGAAGCTGTTCTCTCATGGTCATTAGCTGGAATAGGTTGGATGGCTATTATTGCAGCTTTCTGGAGTGCAGCTAACAC
AACAGTTTATCCAACTGAATTCTTTGGTGAACCACTTGAATTGAAGTTTAGTATTTCGCCTTATTGGGTAGATACAGTTG
ATCTTCCTGATGGTGAGTACACTTCAAGGGCATGGTTAGCTAATGTTCATTACTATTTTGGATTCTTCTTTATTCAAGGT
CATCTATGGCACGCTTTAAGAGCACTAGGCTTTGATTTCAAGAGAGTTACAAATGCTATCAGTAATATTGATAGTGCAAC
AGTTACTCTTAAAGATTAA

Upstream 100 bases:

>100_bases
GTAATAGTTAGGATTAATAACCTTTACAATTTTGTTATGAATTCAACTGTTTGGTGAAATATAAAGTATTCTCAAAACGT
TTAAGCTAATCAATTCCTAA

Downstream 100 bases:

>100_bases
TTTTCAAATTTTCTTACCAATATCAAAAGGCTCCTCTTATCGGAGCCTTTTTTATTTGAAAAATTTTGTTTATTAATTTA
AATTTAGAATTATATGTTTT

Product: light-harvesting complex protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MQTYGNPDTTYGWWAGNSGVANRSGKFIAAHVAHAGLIVFWAGAFTLFELSRFDPSVPMGHQPLIVLPHLATLGIGFDAN
GVAMGDTKPVLAIAIVHLVSSMVLAAGGLLHSLLLPGNLEDSDVARARKFNIEWDNPDKLTFILGHHLIILGFAVIAFVE
WARVHGIYDPAIGSVRQVEYELNLAKIWNHQTDFLTIDSLEEVMGGHAFLAFVEITGGAWHIATKQVGEYTKFKGKGLLS
AEAVLSWSLAGIGWMAIIAAFWSAANTTVYPTEFFGEPLELKFSISPYWVDTVDLPDGEYTSRAWLANVHYYFGFFFIQG
HLWHALRALGFDFKRVTNAISNIDSATVTLKD

Sequences:

>Translated_352_residues
MQTYGNPDTTYGWWAGNSGVANRSGKFIAAHVAHAGLIVFWAGAFTLFELSRFDPSVPMGHQPLIVLPHLATLGIGFDAN
GVAMGDTKPVLAIAIVHLVSSMVLAAGGLLHSLLLPGNLEDSDVARARKFNIEWDNPDKLTFILGHHLIILGFAVIAFVE
WARVHGIYDPAIGSVRQVEYELNLAKIWNHQTDFLTIDSLEEVMGGHAFLAFVEITGGAWHIATKQVGEYTKFKGKGLLS
AEAVLSWSLAGIGWMAIIAAFWSAANTTVYPTEFFGEPLELKFSISPYWVDTVDLPDGEYTSRAWLANVHYYFGFFFIQG
HLWHALRALGFDFKRVTNAISNIDSATVTLKD
>Mature_352_residues
MQTYGNPDTTYGWWAGNSGVANRSGKFIAAHVAHAGLIVFWAGAFTLFELSRFDPSVPMGHQPLIVLPHLATLGIGFDAN
GVAMGDTKPVLAIAIVHLVSSMVLAAGGLLHSLLLPGNLEDSDVARARKFNIEWDNPDKLTFILGHHLIILGFAVIAFVE
WARVHGIYDPAIGSVRQVEYELNLAKIWNHQTDFLTIDSLEEVMGGHAFLAFVEITGGAWHIATKQVGEYTKFKGKGLLS
AEAVLSWSLAGIGWMAIIAAFWSAANTTVYPTEFFGEPLELKFSISPYWVDTVDLPDGEYTSRAWLANVHYYFGFFFIQG
HLWHALRALGFDFKRVTNAISNIDSATVTLKD

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystem II and possibly to photosystem I. The Prochlorales pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 38682; Mature: 38682

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS00626 RCC1_2 ; PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTYGNPDTTYGWWAGNSGVANRSGKFIAAHVAHAGLIVFWAGAFTLFELSRFDPSVPMG
CCCCCCCCCCEEEECCCCCCCCCCCCEEEEHHHHCCEEEEHHHHHHHHHHHHCCCCCCCC
HQPLIVLPHLATLGIGFDANGVAMGDTKPVLAIAIVHLVSSMVLAAGGLLHSLLLPGNLE
CCCEEEECCHHHEECCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DSDVARARKFNIEWDNPDKLTFILGHHLIILGFAVIAFVEWARVHGIYDPAIGSVRQVEY
HHHHHHHHEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
ELNLAKIWNHQTDFLTIDSLEEVMGGHAFLAFVEITGGAWHIATKQVGEYTKFKGKGLLS
EEEHHHHCCCCCCEEEHHHHHHHHCCCEEEEEEEECCCEEEEEHHHHCCHHHCCCCCCEE
AEAVLSWSLAGIGWMAIIAAFWSAANTTVYPTEFFGEPLELKFSISPYWVDTVDLPDGEY
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHCCCCEEEEEEECCEEEEEEECCCCCC
TSRAWLANVHYYFGFFFIQGHLWHALRALGFDFKRVTNAISNIDSATVTLKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure
MQTYGNPDTTYGWWAGNSGVANRSGKFIAAHVAHAGLIVFWAGAFTLFELSRFDPSVPMG
CCCCCCCCCCEEEECCCCCCCCCCCCEEEEHHHHCCEEEEHHHHHHHHHHHHCCCCCCCC
HQPLIVLPHLATLGIGFDANGVAMGDTKPVLAIAIVHLVSSMVLAAGGLLHSLLLPGNLE
CCCEEEECCHHHEECCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DSDVARARKFNIEWDNPDKLTFILGHHLIILGFAVIAFVEWARVHGIYDPAIGSVRQVEY
HHHHHHHHEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
ELNLAKIWNHQTDFLTIDSLEEVMGGHAFLAFVEITGGAWHIATKQVGEYTKFKGKGLLS
EEEHHHHCCCCCCEEEHHHHHHHHCCCEEEEEEEECCCEEEEEHHHHCCHHHCCCCCCEE
AEAVLSWSLAGIGWMAIIAAFWSAANTTVYPTEFFGEPLELKFSISPYWVDTVDLPDGEY
HHHHHHHHHHHHHHHHHHHHHHHCCCCEECCHHHCCCCEEEEEEECCEEEEEEECCCCCC
TSRAWLANVHYYFGFFFIQGHLWHALRALGFDFKRVTNAISNIDSATVTLKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8986795; 12917642 [H]