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The map label for this gene is rbgA [H]

Identifier: 123967749

GI number: 123967749

Start: 197642

End: 198514

Strand: Reverse

Name: rbgA [H]

Synonym: A9601_02121

Alternate gene names: 123967749

Gene position: 198514-197642 (Counterclockwise)

Preceding gene: 123967751

Following gene: 123967748

Centisome position: 11.89

GC content: 35.28

Gene sequence:

>873_bases
GTGGACATACCCAAAATCCAATGGTACCCAGGCCATATCGCAAAAGCAGAAAAGAAATTATCTGAAGTTATCAATAAAGT
AGATTTAGTTATAGAAGTGAGAGATGCACGAATTCCTTTGTCAACAGGACATCCACACTTAAATAAATGGATAAATAATA
AAAAACATATTCTGGTCATTAACAGATCAGATATGATCTCCCCGAATACAATCAATAGTTGGAATAAATGGTTTAATTCT
AAAGATCAATATCCTCTTTGGTGTGATGCTAAAAGAGGAATAGGGATTAAAGAAATTTGTAAGTCAGCCAAAGATTCTAG
GTCGTCAATCGACGATAGAAGACTCTCTAGAGGAATGCGAATTAGGCCAATTAGAGCCCTTACACTTGGTTTTCCAAACG
TAGGAAAGTCGGCATTAATTAATAGAATCGCAAAAAAAAGAGTTGTAGATAGCGCTAGGAAAGCAGGCGTGACTCGTAAT
TTAAGATGGATAAAATTAGAAAGTGGTATAGATCTGCTAGATGCTCCTGGTGTTATACCTCCAAATTTAGAAGATCAAAA
ATCAGCACTTAATCTTGCACTGTGTGACGATATTGGAGAAGCTGCTTATGAAATAGAGAGTGTCGCAATTGGATTTATCA
AAATTATATCCACTCTCAACAAAGATAAGAATGCGAATATCTCAGTTAAACAAATATCTAATAGATATGGAGTTGATATT
ACTAAAGGCTTTAAGAGTCCTTCTGCTTGGATCGACGAAGCAGCTTCAAAACATACCTCTGGCGATAAAAGGAGAATGTC
TCATAAGTTATTGGAAGATTATAGAAATCAAATGCTGGGTAAAATTGCTTTAGAAGTCCCACTATGGAATTAA

Upstream 100 bases:

>100_bases
AAAATTTTTAGTTATTAAATTTATACTAAAATTTAGAAGTAAATACTTTTGAAACTTATAAAAACTAAAAGGAATACAAA
ATTTTATTTGATTTATTGAA

Downstream 100 bases:

>100_bases
ATAATCAAAATTCTTTCGGCATTGGAGAAGGTGAGCTTATAGAAATTATTTATGAGCTACCTCTTCCTATGAGGCTAGAC
AGATGGTTGGTAAGTAAAAG

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MDIPKIQWYPGHIAKAEKKLSEVINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMISPNTINSWNKWFNS
KDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRN
LRWIKLESGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIESVAIGFIKIISTLNKDKNANISVKQISNRYGVDI
TKGFKSPSAWIDEAASKHTSGDKRRMSHKLLEDYRNQMLGKIALEVPLWN

Sequences:

>Translated_290_residues
MDIPKIQWYPGHIAKAEKKLSEVINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMISPNTINSWNKWFNS
KDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRN
LRWIKLESGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIESVAIGFIKIISTLNKDKNANISVKQISNRYGVDI
TKGFKSPSAWIDEAASKHTSGDKRRMSHKLLEDYRNQMLGKIALEVPLWN
>Mature_290_residues
MDIPKIQWYPGHIAKAEKKLSEVINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVINRSDMISPNTINSWNKWFNS
KDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMRIRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRN
LRWIKLESGIDLLDAPGVIPPNLEDQKSALNLALCDDIGEAAYEIESVAIGFIKIISTLNKDKNANISVKQISNRYGVDI
TKGFKSPSAWIDEAASKHTSGDKRRMSHKLLEDYRNQMLGKIALEVPLWN

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI296317324, Length=297, Percent_Identity=24.2424242424242, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI9506611, Length=297, Percent_Identity=24.2424242424242, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI45643129, Length=192, Percent_Identity=27.6041666666667, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI45643127, Length=192, Percent_Identity=27.6041666666667, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI45593130, Length=192, Percent_Identity=27.6041666666667, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI193211047, Length=220, Percent_Identity=30, Blast_Score=94, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17534827, Length=196, Percent_Identity=25, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323744, Length=217, Percent_Identity=27.1889400921659, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6324381, Length=174, Percent_Identity=31.0344827586207, Blast_Score=69, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6320842, Length=185, Percent_Identity=28.1081081081081, Blast_Score=66, Evalue=7e-12,
Organism=Drosophila melanogaster, GI85815858, Length=207, Percent_Identity=28.5024154589372, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28572990, Length=183, Percent_Identity=28.9617486338798, Blast_Score=79, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32747; Mature: 32747

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIPKIQWYPGHIAKAEKKLSEVINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVI
CCCCCCEECCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEE
NRSDMISPNTINSWNKWFNSKDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMR
CCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
IRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRNLRWIKLESGIDLLDAPGVIP
ECEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCC
PNLEDQKSALNLALCDDIGEAAYEIESVAIGFIKIISTLNKDKNANISVKQISNRYGVDI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHEECCCCCCCEE
TKGFKSPSAWIDEAASKHTSGDKRRMSHKLLEDYRNQMLGKIALEVPLWN
ECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCC
>Mature Secondary Structure
MDIPKIQWYPGHIAKAEKKLSEVINKVDLVIEVRDARIPLSTGHPHLNKWINNKKHILVI
CCCCCCEECCCHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHCCCCEEEEE
NRSDMISPNTINSWNKWFNSKDQYPLWCDAKRGIGIKEICKSAKDSRSSIDDRRLSRGMR
CCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCE
IRPIRALTLGFPNVGKSALINRIAKKRVVDSARKAGVTRNLRWIKLESGIDLLDAPGVIP
ECEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCC
PNLEDQKSALNLALCDDIGEAAYEIESVAIGFIKIISTLNKDKNANISVKQISNRYGVDI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHEECCCCCCCEE
TKGFKSPSAWIDEAASKHTSGDKRRMSHKLLEDYRNQMLGKIALEVPLWN
ECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]