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The map label for this gene is ndh [H]

Identifier: 123967632

GI number: 123967632

Start: 97967

End: 99160

Strand: Direct

Name: ndh [H]

Synonym: A9601_00951

Alternate gene names: 123967632

Gene position: 97967-99160 (Clockwise)

Preceding gene: 123967629

Following gene: 123967633

Centisome position: 5.87

GC content: 28.73

Gene sequence:

>1194_bases
ATGAAATCAATACAAAAACCAATAGTAATAGTTGGAGCAGGTTTTGCAGGTATGACATTTGCTTTGAATTTAAAGAAACT
TAATCCTTCTTTACCTATTCTTGTAGTTGATTCTGAAACTAACTTTATATTTAAACCTTTAATGTACGAAGTTTTAAGTA
AAGAGATAAGCAGTTGGGAAGCCAACCCAAAATTTGCAAATATTTTTTCTGATGCGGGTATAACTTTTTTAAGAAATTGT
TTAACCAAAATTGACTTCAAAGAAAATATTCTTGAATTTAGTGATGAATTAAAATTAAGTTATCAATATCTCGTTATCTG
TACAGGATCTATTCCAAATAGTTTTTTTATAAAAGGTGTAGATGAAAATTGTTATTTTTTTAATGATGTTAACGATTTAA
ATAAATTAAATTATTTTTTAAAAAAATCACAAAATACTGCCTTGCATAAAAAGTTATTTATAGTTGGAGGTGGTCCCTCT
GGTATCGAGTTGGCATGCAAAATTAAAGATATATTTACAGACCAATTTGAAATTAATGTAATAGAAAAATCAAACGAAAT
CCTCAATAAAAACAAAATTTTTAATAGAGAACAAGCAGAGAAGGCATTAGAAAAAAGAAAAATCAATGTTCTTTTGAATT
CCACAGTTAAAGAGGTCTCAGAAACTAAAATTACTATTTCTAGTGAGGTTGGAATAACTTCCTTGGATAAAGATATTGTT
ATTTGGACAGCAGGTGTTAAACCTAATTTGTCTTACTTAGAAACTGATCAAATAACAAAAAAATTTGGACGAATTTTAGT
TAATAATAACTTGCAAATAGAAAACCATAAAAACTGTTTTGCTATTGGTGATATTTCAGTTATTGAAGGAATGGAGGATT
TACCCATAACTGCTCAGGTCGCTATGCAGGAAGGAAATCATCTTGCTAATAATTTAGAACTTTTAGTTCAAGGAAAAGAT
CCTTTACCCTTTGAATTTCAAGACAACGGTGAAATGATTAGTTTAGGAATAGGCGAAGCTTCAATTTCTGGGCTTGGGGT
TACTTTATCTGGGAAATTGGCTTTTGAGGCAAGAAGACTTATATATGCTTCCAGGTTGCCTGATATTACAGAAAGCTTAA
AATCTGCATCTTCATGGATATTCCAAAAAAAATCTATTTTTAAAAAGTTTCTTAAAAAAGATTATTCGAATTAA

Upstream 100 bases:

>100_bases
ATCATTCTTCAGTTTGATTATGAGTTTAATTTTATTTCGCTCAATTTATAAATTATTCGTATAGTTTAATAATACATTTA
CGCATATCAATATTTCTCTA

Downstream 100 bases:

>100_bases
ACTTTTTTGAAATATTGTTTTTGGGTATATTGAGTTAAATAAGTTTTGTATGAATTTAATTGCAGTAGTTAGTAATAATT
TTGATGCGTTTATAACGGTA

Product: putative NADH dehydrogenase, transport associated

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MKSIQKPIVIVGAGFAGMTFALNLKKLNPSLPILVVDSETNFIFKPLMYEVLSKEISSWEANPKFANIFSDAGITFLRNC
LTKIDFKENILEFSDELKLSYQYLVICTGSIPNSFFIKGVDENCYFFNDVNDLNKLNYFLKKSQNTALHKKLFIVGGGPS
GIELACKIKDIFTDQFEINVIEKSNEILNKNKIFNREQAEKALEKRKINVLLNSTVKEVSETKITISSEVGITSLDKDIV
IWTAGVKPNLSYLETDQITKKFGRILVNNNLQIENHKNCFAIGDISVIEGMEDLPITAQVAMQEGNHLANNLELLVQGKD
PLPFEFQDNGEMISLGIGEASISGLGVTLSGKLAFEARRLIYASRLPDITESLKSASSWIFQKKSIFKKFLKKDYSN

Sequences:

>Translated_397_residues
MKSIQKPIVIVGAGFAGMTFALNLKKLNPSLPILVVDSETNFIFKPLMYEVLSKEISSWEANPKFANIFSDAGITFLRNC
LTKIDFKENILEFSDELKLSYQYLVICTGSIPNSFFIKGVDENCYFFNDVNDLNKLNYFLKKSQNTALHKKLFIVGGGPS
GIELACKIKDIFTDQFEINVIEKSNEILNKNKIFNREQAEKALEKRKINVLLNSTVKEVSETKITISSEVGITSLDKDIV
IWTAGVKPNLSYLETDQITKKFGRILVNNNLQIENHKNCFAIGDISVIEGMEDLPITAQVAMQEGNHLANNLELLVQGKD
PLPFEFQDNGEMISLGIGEASISGLGVTLSGKLAFEARRLIYASRLPDITESLKSASSWIFQKKSIFKKFLKKDYSN
>Mature_397_residues
MKSIQKPIVIVGAGFAGMTFALNLKKLNPSLPILVVDSETNFIFKPLMYEVLSKEISSWEANPKFANIFSDAGITFLRNC
LTKIDFKENILEFSDELKLSYQYLVICTGSIPNSFFIKGVDENCYFFNDVNDLNKLNYFLKKSQNTALHKKLFIVGGGPS
GIELACKIKDIFTDQFEINVIEKSNEILNKNKIFNREQAEKALEKRKINVLLNSTVKEVSETKITISSEVGITSLDKDIV
IWTAGVKPNLSYLETDQITKKFGRILVNNNLQIENHKNCFAIGDISVIEGMEDLPITAQVAMQEGNHLANNLELLVQGKD
PLPFEFQDNGEMISLGIGEASISGLGVTLSGKLAFEARRLIYASRLPDITESLKSASSWIFQKKSIFKKFLKKDYSN

Specific function: Transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Does not couple the redox reaction to proton translocation [H]

COG id: COG1252

COG function: function code C; NADH dehydrogenase, FAD-containing subunit

Gene ontology:

Cell location: Cell membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADH dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1787352, Length=368, Percent_Identity=27.1739130434783, Blast_Score=113, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6323515, Length=472, Percent_Identity=24.5762711864407, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323794, Length=348, Percent_Identity=27.5862068965517, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320118, Length=353, Percent_Identity=27.4787535410765, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.6.99.3 [H]

Molecular weight: Translated: 44527; Mature: 44527

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIQKPIVIVGAGFAGMTFALNLKKLNPSLPILVVDSETNFIFKPLMYEVLSKEISSWE
CCCCCCCEEEEECCCCCEEEEEEEEECCCCCCEEEEECCCCEEHHHHHHHHHHHHHHCCC
ANPKFANIFSDAGITFLRNCLTKIDFKENILEFSDELKLSYQYLVICTGSIPNSFFIKGV
CCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEEC
DENCYFFNDVNDLNKLNYFLKKSQNTALHKKLFIVGGGPSGIELACKIKDIFTDQFEINV
CCCEEEECCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEEHHCCCCEEEEE
IEKSNEILNKNKIFNREQAEKALEKRKINVLLNSTVKEVSETKITISSEVGITSLDKDIV
EECCCHHHHHHHCCCHHHHHHHHHHHHHHEEEHHHHHHHHHCEEEEECCCCCEECCCCEE
IWTAGVKPNLSYLETDQITKKFGRILVNNNLQIENHKNCFAIGDISVIEGMEDLPITAQV
EEECCCCCCCCCCCHHHHHHHHCCEEECCCEEEECCCCEEEECCHHHHCCCCCCCCEEEE
AMQEGNHLANNLELLVQGKDPLPFEFQDNGEMISLGIGEASISGLGVTLSGKLAFEARRL
EHHCCCCCCCCEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHH
IYASRLPDITESLKSASSWIFQKKSIFKKFLKKDYSN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSIQKPIVIVGAGFAGMTFALNLKKLNPSLPILVVDSETNFIFKPLMYEVLSKEISSWE
CCCCCCCEEEEECCCCCEEEEEEEEECCCCCCEEEEECCCCEEHHHHHHHHHHHHHHCCC
ANPKFANIFSDAGITFLRNCLTKIDFKENILEFSDELKLSYQYLVICTGSIPNSFFIKGV
CCCCHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEEEEC
DENCYFFNDVNDLNKLNYFLKKSQNTALHKKLFIVGGGPSGIELACKIKDIFTDQFEINV
CCCEEEECCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEEHHCCCCEEEEE
IEKSNEILNKNKIFNREQAEKALEKRKINVLLNSTVKEVSETKITISSEVGITSLDKDIV
EECCCHHHHHHHCCCHHHHHHHHHHHHHHEEEHHHHHHHHHCEEEEECCCCCEECCCCEE
IWTAGVKPNLSYLETDQITKKFGRILVNNNLQIENHKNCFAIGDISVIEGMEDLPITAQV
EEECCCCCCCCCCCHHHHHHHHCCEEECCCEEEECCCCEEEECCHHHHCCCCCCCCEEEE
AMQEGNHLANNLELLVQGKDPLPFEFQDNGEMISLGIGEASISGLGVTLSGKLAFEARRL
EHHCCCCCCCCEEEEEECCCCCCEEECCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHH
IYASRLPDITESLKSASSWIFQKKSIFKKFLKKDYSN
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 6265208; 8905232; 9278503 [H]