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The map label for this gene is sufC [C]

Identifier: 123967621

GI number: 123967621

Start: 88077

End: 88862

Strand: Reverse

Name: sufC [C]

Synonym: A9601_00841

Alternate gene names: 123967621

Gene position: 88862-88077 (Counterclockwise)

Preceding gene: 123967622

Following gene: 123967620

Centisome position: 5.32

GC content: 33.08

Gene sequence:

>786_bases
ATGCAAAGTAAAATGAAAGAATCAGATCCAATTTTAGAAGTTGAAAATCTCTCTGCATCTACTGATAATCTTCCAATTTT
AAAAGGGGTTTCACTTACTGTCTATCCTGGAGAAATCCATGCCATTATGGGAAGAAATGGATGTGGCAAAAGTACTCTTT
CGAAAATCATTGCAGGACATCCCTCGTATAATATTACAAATGGCGACATAAAATTTTTAGGTGAAAACATCAACTCTCTA
GAACCTGAAGAGAGATCTCAATCAGGAATTTTTCTTGGTTTTCAATATCCAATTGAGATTCCAGGTGTAAGTAATCTTGA
GTTTCTTAGAGTTTCAACTAATGCTAGAAGGAAATTCCTCAACAAAGAAGAATTAGATACTTTTGATTTTGAAGAATTAG
TTAAAGAAAAGTTAGAAATTGTGAAAATGGATCATGCATTCCTATCAAGGAGTGTAAATCAAGGATTTTCTGGAGGTGAA
AAAAAAAGAAATGAAATTCTGCAAATGGCTTTACTTGAGCCCAAGATAGCAATATTAGATGAGACCGATTCTGGTCTAGA
TATTGATGCTCTAAGGATAGTGGCTTCAGGAATTAAAAAAATATCTAATGCACAAACTGGGATTATACTTATTACCCACT
ATCAAAGATTATTAGATGAAATTGAACCAAATTATGTCCATGTAATGTCAGACGGACAAATCATAAAAACAGGTGAGAGT
GATCTTGCTTTAGAGCTTGAGAAAAAAGGGTATGAATGGACTGATAACTTTATAAAAGAGACCTAA

Upstream 100 bases:

>100_bases
ATTTAATCAATTACCTATGGAATTTGCTGCTGAAGCAGATAAGTTACTGGCACTTAAACTAGAGGGATCAGTAGGTTAAT
TAAACAATTTCTAAAGTGAA

Downstream 100 bases:

>100_bases
GTAAATGGAAATTATTGAAAAAATAAAAACTAATAAATCGATTGATAATCAAACAGAAATACAAAAAATCTGTCTAAATA
AATTACAATCAAGTCCCCTC

Product: ABC transporter, ATP binding component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MQSKMKESDPILEVENLSASTDNLPILKGVSLTVYPGEIHAIMGRNGCGKSTLSKIIAGHPSYNITNGDIKFLGENINSL
EPEERSQSGIFLGFQYPIEIPGVSNLEFLRVSTNARRKFLNKEELDTFDFEELVKEKLEIVKMDHAFLSRSVNQGFSGGE
KKRNEILQMALLEPKIAILDETDSGLDIDALRIVASGIKKISNAQTGIILITHYQRLLDEIEPNYVHVMSDGQIIKTGES
DLALELEKKGYEWTDNFIKET

Sequences:

>Translated_261_residues
MQSKMKESDPILEVENLSASTDNLPILKGVSLTVYPGEIHAIMGRNGCGKSTLSKIIAGHPSYNITNGDIKFLGENINSL
EPEERSQSGIFLGFQYPIEIPGVSNLEFLRVSTNARRKFLNKEELDTFDFEELVKEKLEIVKMDHAFLSRSVNQGFSGGE
KKRNEILQMALLEPKIAILDETDSGLDIDALRIVASGIKKISNAQTGIILITHYQRLLDEIEPNYVHVMSDGQIIKTGES
DLALELEKKGYEWTDNFIKET
>Mature_261_residues
MQSKMKESDPILEVENLSASTDNLPILKGVSLTVYPGEIHAIMGRNGCGKSTLSKIIAGHPSYNITNGDIKFLGENINSL
EPEERSQSGIFLGFQYPIEIPGVSNLEFLRVSTNARRKFLNKEELDTFDFEELVKEKLEIVKMDHAFLSRSVNQGFSGGE
KKRNEILQMALLEPKIAILDETDSGLDIDALRIVASGIKKISNAQTGIILITHYQRLLDEIEPNYVHVMSDGQIIKTGES
DLALELEKKGYEWTDNFIKET

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI156105685, Length=229, Percent_Identity=27.0742358078603, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI42741659, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI9961252, Length=219, Percent_Identity=27.8538812785388, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4505771, Length=219, Percent_Identity=27.8538812785388, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9961250, Length=236, Percent_Identity=30.0847457627119, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1787972, Length=243, Percent_Identity=53.0864197530864, Blast_Score=286, Evalue=7e-79,
Organism=Escherichia coli, GI1789891, Length=217, Percent_Identity=32.7188940092166, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787792, Length=240, Percent_Identity=27.5, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87081791, Length=244, Percent_Identity=27.4590163934426, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=28.5106382978723, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787500, Length=224, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=26.3157894736842, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788761, Length=231, Percent_Identity=26.4069264069264, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790467, Length=183, Percent_Identity=28.9617486338798, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787370, Length=232, Percent_Identity=25, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787712, Length=206, Percent_Identity=27.1844660194175, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789864, Length=244, Percent_Identity=26.2295081967213, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789672, Length=243, Percent_Identity=24.6913580246914, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786654, Length=253, Percent_Identity=25.296442687747, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789593, Length=232, Percent_Identity=28.448275862069, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082267, Length=177, Percent_Identity=28.8135593220339, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=27.1551724137931, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787759, Length=261, Percent_Identity=24.904214559387, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1786319, Length=188, Percent_Identity=27.1276595744681, Blast_Score=60, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17558664, Length=255, Percent_Identity=28.2352941176471, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=235, Percent_Identity=27.2340425531915, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=219, Percent_Identity=26.9406392694064, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=228, Percent_Identity=28.5087719298246, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=228, Percent_Identity=28.5087719298246, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=228, Percent_Identity=28.5087719298246, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71992285, Length=240, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=267, Percent_Identity=28.0898876404494, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17136592, Length=205, Percent_Identity=27.8048780487805, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29188; Mature: 29188

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSKMKESDPILEVENLSASTDNLPILKGVSLTVYPGEIHAIMGRNGCGKSTLSKIIAGH
CCCCCCCCCCCEEEECCCCCCCCCCEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
PSYNITNGDIKFLGENINSLEPEERSQSGIFLGFQYPIEIPGVSNLEFLRVSTNARRKFL
CCCCCCCCCEEEECCCCCCCCCCHHCCCCEEEEEECCEECCCCCCCEEEEECCHHHHHHC
NKEELDTFDFEELVKEKLEIVKMDHAFLSRSVNQGFSGGEKKRNEILQMALLEPKIAILD
CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEE
ETDSGLDIDALRIVASGIKKISNAQTGIILITHYQRLLDEIEPNYVHVMSDGQIIKTGES
CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCEEEEECCCEEEEECCC
DLALELEKKGYEWTDNFIKET
CEEEEEECCCCCHHHHHHCCC
>Mature Secondary Structure
MQSKMKESDPILEVENLSASTDNLPILKGVSLTVYPGEIHAIMGRNGCGKSTLSKIIAGH
CCCCCCCCCCCEEEECCCCCCCCCCEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
PSYNITNGDIKFLGENINSLEPEERSQSGIFLGFQYPIEIPGVSNLEFLRVSTNARRKFL
CCCCCCCCCEEEECCCCCCCCCCHHCCCCEEEEEECCEECCCCCCCEEEEECCHHHHHHC
NKEELDTFDFEELVKEKLEIVKMDHAFLSRSVNQGFSGGEKKRNEILQMALLEPKIAILD
CHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEE
ETDSGLDIDALRIVASGIKKISNAQTGIILITHYQRLLDEIEPNYVHVMSDGQIIKTGES
CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCEEEEECCCEEEEECCC
DLALELEKKGYEWTDNFIKET
CEEEEEECCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]