Click here to switch to the map view.

The map label for this gene is 123967567

Identifier: 123967567

GI number: 123967567

Start: 30459

End: 30860

Strand: Reverse

Name: 123967567

Synonym: A9601_00301

Alternate gene names: NA

Gene position: 30860-30459 (Counterclockwise)

Preceding gene: 123967568

Following gene: 123967565

Centisome position: 1.85

GC content: 34.08

Gene sequence:

>402_bases
ATGCATATCAACGATGCGGTGTTTTTAGAGGATTTATGTCCTAAGTTCAGATTTAGACAATGGCGAAAATCTATCCATAG
GTTTACAGGAAAAAGTTGTATATATTGCGGAAAACCATCTGAATCTATTGACCATGTAATACCGCGATGCCAAGGAGGCT
TAAGTACAACTGAAAACTGTGTCCCTGCATGTCTTTCCTGTAATGGGGATAAATCAGATGAAAATGCTTTGTATTGGTAT
AGAAGACAAAAATTTTATGATCCTCGAAGAGCAATGGCTATAAGAGCTTGGTTAGAGGGAGATTTAAGATTAGCTATTAG
ATTACTGCAATGGGCTAATCCTAATTTTAAAGTAAAAAATAAAAATTACGAAAAAAATAAATCAGAATATAAAGCAGCTT
GA

Upstream 100 bases:

>100_bases
ACTAAAACATATTTTTACTTGCAAATTTAGACTAAAAAAGGTGAGTAATTATTGACTTTTAATATATTCAAGCCATTATT
TACTTAACTAAATATTCTGA

Downstream 100 bases:

>100_bases
CTACCAAACATTACATATTTTTCTAGAGTTATAACTCTCACATATGTTTTCCAATTCTTTTGGAGATTCTGGAAATATTA
AAATTGTCGAAAATGCAAGA

Product: HNH endonuclease:HNH nuclease

Products: NA

Alternate protein names: HNH Nuclease; McrA/HNH Family Nuclease

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MHINDAVFLEDLCPKFRFRQWRKSIHRFTGKSCIYCGKPSESIDHVIPRCQGGLSTTENCVPACLSCNGDKSDENALYWY
RRQKFYDPRRAMAIRAWLEGDLRLAIRLLQWANPNFKVKNKNYEKNKSEYKAA

Sequences:

>Translated_133_residues
MHINDAVFLEDLCPKFRFRQWRKSIHRFTGKSCIYCGKPSESIDHVIPRCQGGLSTTENCVPACLSCNGDKSDENALYWY
RRQKFYDPRRAMAIRAWLEGDLRLAIRLLQWANPNFKVKNKNYEKNKSEYKAA
>Mature_133_residues
MHINDAVFLEDLCPKFRFRQWRKSIHRFTGKSCIYCGKPSESIDHVIPRCQGGLSTTENCVPACLSCNGDKSDENALYWY
RRQKFYDPRRAMAIRAWLEGDLRLAIRLLQWANPNFKVKNKNYEKNKSEYKAA

Specific function: Unknown

COG id: COG1403

COG function: function code V; Restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15638; Mature: 15638

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHINDAVFLEDLCPKFRFRQWRKSIHRFTGKSCIYCGKPSESIDHVIPRCQGGLSTTENC
CCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCCHHH
VPACLSCNGDKSDENALYWYRRQKFYDPRRAMAIRAWLEGDLRLAIRLLQWANPNFKVKN
HHHHHCCCCCCCCCCCEEHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECC
KNYEKNKSEYKAA
CCCCCCCHHCCCC
>Mature Secondary Structure
MHINDAVFLEDLCPKFRFRQWRKSIHRFTGKSCIYCGKPSESIDHVIPRCQGGLSTTENC
CCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCCHHH
VPACLSCNGDKSDENALYWYRRQKFYDPRRAMAIRAWLEGDLRLAIRLLQWANPNFKVKN
HHHHHCCCCCCCCCCCEEHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEECC
KNYEKNKSEYKAA
CCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA