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The map label for this gene is rpsF

Identifier: 123967130

GI number: 123967130

Start: 1690646

End: 1691113

Strand: Direct

Name: rpsF

Synonym: P9515_18971

Alternate gene names: 123967130

Gene position: 1690646-1691113 (Clockwise)

Preceding gene: 123967129

Following gene: 123967133

Centisome position: 99.21

GC content: 34.4

Gene sequence:

>468_bases
ATGACTGATCAAATTTATTACGAAACTATGTATATTCTTCGCCCGGATATCGCGGAGGAGGAAGTGAAAAATCATATCGA
TAAATATAATAAACTTCTTGAAGAATTTGGTGCGACAATCCTCGATAGTCAAATGAGAGGTAAAAGAAGGCTTGCTTATC
AGATAGCAAAACATCGGGAGGGGATTTATGTGCAATTAAGTCATCAAGGGGACGGACAACATATCTTCAAAATAGAAAAA
GCAATGCGTTTAAGTGAAGATGTCATAAGATATTTGACAGTAAAGCAAGAAGGTCCTTTACCGACACCAAGATCTTCTAA
TAAAAGCTCTAATCAAGCAGAAAAAAAAGAAAATGAGAATATTGATTCAGCCAATAAATCTGAGCCTAAAGCAGACGAAA
CGGATAATAAAAAGAAAATAACCTTAGAATCTTCTACTCCAGAATTAGAAGAGCAAGTAAAATCTTAA

Upstream 100 bases:

>100_bases
AAGCTCATTATTATTAAGAATATGACCTTGATAATGTATCGTATGTAATGTACAGACGCTCATTAACAAATTTACGAGCC
AAAGACCTTGTCTGAAAATT

Downstream 100 bases:

>100_bases
GTTTTAATTATTCATTTTTGAATTTAATTCTGCCCATATTTTATTAGACATACCCCACATATAGATGAATCCTTCTGCTT
GCTTGTGGTCAAAAATATCA

Product: 30S ribosomal protein S6

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MTDQIYYETMYILRPDIAEEEVKNHIDKYNKLLEEFGATILDSQMRGKRRLAYQIAKHREGIYVQLSHQGDGQHIFKIEK
AMRLSEDVIRYLTVKQEGPLPTPRSSNKSSNQAEKKENENIDSANKSEPKADETDNKKKITLESSTPELEEQVKS

Sequences:

>Translated_155_residues
MTDQIYYETMYILRPDIAEEEVKNHIDKYNKLLEEFGATILDSQMRGKRRLAYQIAKHREGIYVQLSHQGDGQHIFKIEK
AMRLSEDVIRYLTVKQEGPLPTPRSSNKSSNQAEKKENENIDSANKSEPKADETDNKKKITLESSTPELEEQVKS
>Mature_154_residues
TDQIYYETMYILRPDIAEEEVKNHIDKYNKLLEEFGATILDSQMRGKRRLAYQIAKHREGIYVQLSHQGDGQHIFKIEKA
MRLSEDVIRYLTVKQEGPLPTPRSSNKSSNQAEKKENENIDSANKSEPKADETDNKKKITLESSTPELEEQVKS

Specific function: Binds together with S18 to 16S ribosomal RNA

COG id: COG0360

COG function: function code J; Ribosomal protein S6

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S6P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS6_PROM5 (A2BZ93)

Other databases:

- EMBL:   CP000552
- RefSeq:   YP_001012211.1
- ProteinModelPortal:   A2BZ93
- SMR:   A2BZ93
- STRING:   A2BZ93
- GeneID:   4720130
- GenomeReviews:   CP000552_GR
- KEGG:   pmc:P9515_18971
- eggNOG:   COG0360
- HOGENOM:   HBG747554
- OMA:   EGIYAVL
- ProtClustDB:   PRK00453
- BioCyc:   PMAR167542:P9515ORF_1980-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00360
- InterPro:   IPR000529
- InterPro:   IPR020815
- InterPro:   IPR020814
- InterPro:   IPR014717
- Gene3D:   G3DSA:3.30.70.60
- TIGRFAMs:   TIGR00166

Pfam domain/function: PF01250 Ribosomal_S6; SSF54995 Ribosomal_S6

EC number: NA

Molecular weight: Translated: 17957; Mature: 17826

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS01048 RIBOSOMAL_S6

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQIYYETMYILRPDIAEEEVKNHIDKYNKLLEEFGATILDSQMRGKRRLAYQIAKHRE
CCCHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
GIYVQLSHQGDGQHIFKIEKAMRLSEDVIRYLTVKQEGPLPTPRSSNKSSNQAEKKENEN
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCC
IDSANKSEPKADETDNKKKITLESSTPELEEQVKS
CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCC
>Mature Secondary Structure 
TDQIYYETMYILRPDIAEEEVKNHIDKYNKLLEEFGATILDSQMRGKRRLAYQIAKHRE
CCHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCC
GIYVQLSHQGDGQHIFKIEKAMRLSEDVIRYLTVKQEGPLPTPRSSNKSSNQAEKKENEN
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCC
IDSANKSEPKADETDNKKKITLESSTPELEEQVKS
CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA