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The map label for this gene is rnd [H]

Identifier: 123967004

GI number: 123967004

Start: 1558918

End: 1559559

Strand: Direct

Name: rnd [H]

Synonym: P9515_17711

Alternate gene names: 123967004

Gene position: 1558918-1559559 (Clockwise)

Preceding gene: 123967002

Following gene: 123967010

Centisome position: 91.48

GC content: 28.35

Gene sequence:

>642_bases
ATGAATAATACTCAAAAAAATGAAAAAATAACTCTCTACAATAATGACATAACCCAAAACTTATATAATATCTATAAGGA
TTCCTCTTATTTAGCTGTAGATACTGAGGCAATGGGATTAATACATGGAAGAGATCGGCTATGTTTAATTCAAATATCTA
ATGAATTTCATTTAACTTCATGCATAAAGATAGAACTTAATAACTCAGATTCACCCCACATAAAAAAATTATTTGAAGAT
AATAAAATAATGAAAATATTTCATTACGCAAGATTTGATGTGGCAGCTCTAAAATGTAACTTAAACATCAATACAAACAA
TATTTTTTGTACAAAAATAGCTAGTAAATTGGCTAGGACATATACACATAAACATGGCTTAAAAGAGTTAATCCATGAAT
TAATAGGAATAGAATTAGATAAAAGTTCGCAAAGTAGTGATTGGGGTAGTTGCGAGGATTTATCTGACAAACAAATTGAT
TATGCTGCGAATGACGTTAAATATCTGATAGAAGCAATGCGCAAATTAAGAATCATTCTTGAGAGAGAAGGAAGATATGA
CTTGGCTCAGAAATGTTTTCAAACTATTCCGGTTCATTCTGAATTAGATATATTAAAGTTTTCTAATATATTTGAGCATT
AA

Upstream 100 bases:

>100_bases
ACTACGATTAAACATGAATTAAATTCCAGATAAATAATTGAATCACAAATTTATAAAAATAATGTAAAGTAATAATTAAG
GTAAATTTGCGTTAATAATT

Downstream 100 bases:

>100_bases
TTAATCTTCAGTCATAAAATTGTCTTCATTCTCTAGAGTCGACATAAGTTTATCTAGTATCTTTGAAGAACTTAGCTTTT
TCCCATTATCCTTTTCACTT

Product: putative ribonuclease D

Products: NA

Alternate protein names: POL I [H]

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MNNTQKNEKITLYNNDITQNLYNIYKDSSYLAVDTEAMGLIHGRDRLCLIQISNEFHLTSCIKIELNNSDSPHIKKLFED
NKIMKIFHYARFDVAALKCNLNINTNNIFCTKIASKLARTYTHKHGLKELIHELIGIELDKSSQSSDWGSCEDLSDKQID
YAANDVKYLIEAMRKLRIILEREGRYDLAQKCFQTIPVHSELDILKFSNIFEH

Sequences:

>Translated_213_residues
MNNTQKNEKITLYNNDITQNLYNIYKDSSYLAVDTEAMGLIHGRDRLCLIQISNEFHLTSCIKIELNNSDSPHIKKLFED
NKIMKIFHYARFDVAALKCNLNINTNNIFCTKIASKLARTYTHKHGLKELIHELIGIELDKSSQSSDWGSCEDLSDKQID
YAANDVKYLIEAMRKLRIILEREGRYDLAQKCFQTIPVHSELDILKFSNIFEH
>Mature_213_residues
MNNTQKNEKITLYNNDITQNLYNIYKDSSYLAVDTEAMGLIHGRDRLCLIQISNEFHLTSCIKIELNNSDSPHIKKLFED
NKIMKIFHYARFDVAALKCNLNINTNNIFCTKIASKLARTYTHKHGLKELIHELIGIELDKSSQSSDWGSCEDLSDKQID
YAANDVKYLIEAMRKLRIILEREGRYDLAQKCFQTIPVHSELDILKFSNIFEH

Specific function: Cleaves Multimeric tRNA Precursor At The Spacer Region. [C]

COG id: COG0349

COG function: function code J; Ribonuclease D

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 3'-5' exonuclease domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002562
- InterPro:   IPR019760
- InterPro:   IPR001098
- InterPro:   IPR002298
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01612 3_5_exonuc; PF00476 DNA_pol_A [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 24749; Mature: 24749

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTQKNEKITLYNNDITQNLYNIYKDSSYLAVDTEAMGLIHGRDRLCLIQISNEFHLTS
CCCCCCCCEEEEECCHHHHHHHHHHCCCCEEEEEHHHHEEEECCCCEEEEEECCCEEEEE
CIKIELNNSDSPHIKKLFEDNKIMKIFHYARFDVAALKCNLNINTNNIFCTKIASKLART
EEEEEECCCCCHHHHHHHCCCCCEEHHHHHHHEEEEEEEEEEECCCCEEHHHHHHHHHHH
YTHKHGLKELIHELIGIELDKSSQSSDWGSCEDLSDKQIDYAANDVKYLIEAMRKLRIIL
HHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EREGRYDLAQKCFQTIPVHSELDILKFSNIFEH
HCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MNNTQKNEKITLYNNDITQNLYNIYKDSSYLAVDTEAMGLIHGRDRLCLIQISNEFHLTS
CCCCCCCCEEEEECCHHHHHHHHHHCCCCEEEEEHHHHEEEECCCCEEEEEECCCEEEEE
CIKIELNNSDSPHIKKLFEDNKIMKIFHYARFDVAALKCNLNINTNNIFCTKIASKLART
EEEEEECCCCCHHHHHHHCCCCCEEHHHHHHHEEEEEEEEEEECCCCEEHHHHHHHHHHH
YTHKHGLKELIHELIGIELDKSSQSSDWGSCEDLSDKQIDYAANDVKYLIEAMRKLRIIL
HHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EREGRYDLAQKCFQTIPVHSELDILKFSNIFEH
HCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]