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The map label for this gene is 123966986

Identifier: 123966986

GI number: 123966986

Start: 1538507

End: 1540012

Strand: Reverse

Name: 123966986

Synonym: P9515_17531

Alternate gene names: NA

Gene position: 1540012-1538507 (Counterclockwise)

Preceding gene: 123966988

Following gene: 123966984

Centisome position: 90.37

GC content: 33.47

Gene sequence:

>1506_bases
ATGTTTAAGACTGATATTGTTGTAGTTGGTGCTGGTATAGCAGGATTAACTTCTGCTGCTATTTTATCAAAACTAGGGCT
TTCAGTGACTCTGATTGAATCACATACTCAATCGGGAGGTTGTGCTGGAACATTCAAGAGAAAAAATTATATTTTTGATG
TTGGTGCCACTCAAGTAGCAGGATTAGAAGAAGGGGGGATACACTCTAAAATTTTTAAATTTCTAAATATTCCTCTCCCT
GAAGCCTCAATATTAAATCCAGCTTGTATCGTTGATTTAAATGATGGAAGTAAGGCAATACCTATTTGGTATGACAAAAA
TGAATGGATTAAAGAGAGGGAGATGCAGTTTCCAGGGAGTCGTAAATTTTGGCAATTATGTAATTTAATTCATCAGAGCA
ATTGGACTTTCGCGAACAATAATCCTGTATTACCTATTAGGAATTTTTGGGATTTTTCACAACTTCTCAAAGCATTAGTT
CCAACGAATCTAGTAACAGGAATATTGCTAAAATCTACTATTTTTGACCTTTTACGACTTTGTGGATTATCAAATGACGA
GAGATTAATTAAGTTTCTTAATTTGCAATTAAAGCTTTATTCACAAGAAGATGTTCATAACACAGCAGCTCTATATGGTT
CTACAGTATTACAAATGTGTCAAAAACCGCATGGTCTGTGGCATTTAAAAAAATCTATGCAGGTTCTAAGTGAGGCTTTA
GAACATTCCTTAAAAAACACAGGAGTCGATATTTTTTTCGAGCAACAAGTAAATTCTATAAAATATGATGATTCAAGAAA
GATTTGGCAAGTTTGTGCAAAATCTAAGCTTGGGGAAGTGGATTACTACGCAGATAATGTAATTTATACACCACCACCAC
AATCTCTTTTGAAACATCTAAAAAATTCTCTAGATGAAAATCATAATTATAGAAATACAATAAAACGCCTTCCTAAGCCA
AGTGGTGCTTTAGTGTTCTATTCGGCTTTAAAAAAAAAGCATATTAAATTAATCTCATCAAATCATTATCAAGTTGTTTC
TGATGAATTGGGATCACTTTTTATTTCTATAAGTGAGGATGGAGATGGGAGAGCTCCAAAGGGCGAAGTGACATTGATAG
CTAGTATTTTTACTAAAACAAATGACTGGTTTGATTTAGATAAAACTGCATATAGCAATAAAAAAAAGGACTATCTCAAA
AAAATTTCGATTGTACTAGAAAATCAATTTGATATTTCTTCTGAAAATTGGCTCCATAAGGAATTAGCCACTCCAATGGG
TTTTGAAAGATGGACTAATAGGCCAAATGGAATAGTAGGTGGTTTAGGTCAAAATCCTGATATTTTTGGATTATTTGGTT
TATCAAGTAGAACTCCATTCGAGGGTTTATGGTTATGTGGGGATTCTATTTATCCTGGAGAGGGTACAGCTGGTGTTAGT
CAGTCCGCACTAATGGTTGCAAGACAAATTCTAGCTTCTAAAGGAATTAATGATTTTCATTTATGA

Upstream 100 bases:

>100_bases
AATATCTCCTCCAAAAACTTGTTTTATACTTTTTGGTGATCCTTCTCCTAATTGATTACAAATTTCGCTAACTTCAAAGT
GAGATAATTTTTGCATCTTA

Downstream 100 bases:

>100_bases
AAATTTTAATTAATAAAGTTTGATCTTATTTCTTTTGCCTCTGTCAGTTTTTTTGAGAGTAATTCCCAATTTTTGTTTTT
TATTAGAGCTTCAATATCAT

Product: phytoene dehydrogenase

Products: NA

Alternate protein names: FAD Dependent Oxidoreductase; Carotenoid Isomerase; C-3 4' Desaturase CrtD; Phytoene Dehydrogenase; Carotene Isomerase; Phytoene Dehydrogenase ; Phytoene Dehydrogenase-Related Protein; Lycopene Cyclase; Squalene Synthase; Phytoene Dehydrogenase And Related Protein; Carotenoid Cis-Trans Isomerase; Phytoene Dehydrogenase And Related Proteins; Phytoene Dehydrogenase-Like; All-Trans-Retinol; Phytoene Dehydrogenase/Carotenoid Isomerase

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MFKTDIVVVGAGIAGLTSAAILSKLGLSVTLIESHTQSGGCAGTFKRKNYIFDVGATQVAGLEEGGIHSKIFKFLNIPLP
EASILNPACIVDLNDGSKAIPIWYDKNEWIKEREMQFPGSRKFWQLCNLIHQSNWTFANNNPVLPIRNFWDFSQLLKALV
PTNLVTGILLKSTIFDLLRLCGLSNDERLIKFLNLQLKLYSQEDVHNTAALYGSTVLQMCQKPHGLWHLKKSMQVLSEAL
EHSLKNTGVDIFFEQQVNSIKYDDSRKIWQVCAKSKLGEVDYYADNVIYTPPPQSLLKHLKNSLDENHNYRNTIKRLPKP
SGALVFYSALKKKHIKLISSNHYQVVSDELGSLFISISEDGDGRAPKGEVTLIASIFTKTNDWFDLDKTAYSNKKKDYLK
KISIVLENQFDISSENWLHKELATPMGFERWTNRPNGIVGGLGQNPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
QSALMVARQILASKGINDFHL

Sequences:

>Translated_501_residues
MFKTDIVVVGAGIAGLTSAAILSKLGLSVTLIESHTQSGGCAGTFKRKNYIFDVGATQVAGLEEGGIHSKIFKFLNIPLP
EASILNPACIVDLNDGSKAIPIWYDKNEWIKEREMQFPGSRKFWQLCNLIHQSNWTFANNNPVLPIRNFWDFSQLLKALV
PTNLVTGILLKSTIFDLLRLCGLSNDERLIKFLNLQLKLYSQEDVHNTAALYGSTVLQMCQKPHGLWHLKKSMQVLSEAL
EHSLKNTGVDIFFEQQVNSIKYDDSRKIWQVCAKSKLGEVDYYADNVIYTPPPQSLLKHLKNSLDENHNYRNTIKRLPKP
SGALVFYSALKKKHIKLISSNHYQVVSDELGSLFISISEDGDGRAPKGEVTLIASIFTKTNDWFDLDKTAYSNKKKDYLK
KISIVLENQFDISSENWLHKELATPMGFERWTNRPNGIVGGLGQNPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
QSALMVARQILASKGINDFHL
>Mature_501_residues
MFKTDIVVVGAGIAGLTSAAILSKLGLSVTLIESHTQSGGCAGTFKRKNYIFDVGATQVAGLEEGGIHSKIFKFLNIPLP
EASILNPACIVDLNDGSKAIPIWYDKNEWIKEREMQFPGSRKFWQLCNLIHQSNWTFANNNPVLPIRNFWDFSQLLKALV
PTNLVTGILLKSTIFDLLRLCGLSNDERLIKFLNLQLKLYSQEDVHNTAALYGSTVLQMCQKPHGLWHLKKSMQVLSEAL
EHSLKNTGVDIFFEQQVNSIKYDDSRKIWQVCAKSKLGEVDYYADNVIYTPPPQSLLKHLKNSLDENHNYRNTIKRLPKP
SGALVFYSALKKKHIKLISSNHYQVVSDELGSLFISISEDGDGRAPKGEVTLIASIFTKTNDWFDLDKTAYSNKKKDYLK
KISIVLENQFDISSENWLHKELATPMGFERWTNRPNGIVGGLGQNPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
QSALMVARQILASKGINDFHL

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI58761544, Length=138, Percent_Identity=30.4347826086957, Blast_Score=68, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56060; Mature: 56060

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKTDIVVVGAGIAGLTSAAILSKLGLSVTLIESHTQSGGCAGTFKRKNYIFDVGATQVA
CCCCCEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCEEEECCCHHCC
GLEEGGIHSKIFKFLNIPLPEASILNPACIVDLNDGSKAIPIWYDKNEWIKEREMQFPGS
CCCCCCHHHHHHHHHCCCCCCHHHCCCEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCC
RKFWQLCNLIHQSNWTFANNNPVLPIRNFWDFSQLLKALVPTNLVTGILLKSTIFDLLRL
HHHHHHHHHHHHCCCEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGLSNDERLIKFLNLQLKLYSQEDVHNTAALYGSTVLQMCQKPHGLWHLKKSMQVLSEAL
HCCCCHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
EHSLKNTGVDIFFEQQVNSIKYDDSRKIWQVCAKSKLGEVDYYADNVIYTPPPQSLLKHL
HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCEECCCHHHHHHHH
KNSLDENHNYRNTIKRLPKPSGALVFYSALKKKHIKLISSNHYQVVSDELGSLFISISED
HHHHHCCCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCEEEHHHCCCEEEEEEECC
GDGRAPKGEVTLIASIFTKTNDWFDLDKTAYSNKKKDYLKKISIVLENQFDISSENWLHK
CCCCCCCCCEEEEEEEHHCCCCCCCCCHHHHCCHHHHHHHHHHHHEECCCCCCCCCHHHH
ELATPMGFERWTNRPNGIVGGLGQNPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
HHCCCCCHHHHCCCCCCEEECCCCCCCEEEEECCCCCCCCCEEEEECCEECCCCCCCCCC
QSALMVARQILASKGINDFHL
HHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFKTDIVVVGAGIAGLTSAAILSKLGLSVTLIESHTQSGGCAGTFKRKNYIFDVGATQVA
CCCCCEEEEECCHHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCEEEECCCHHCC
GLEEGGIHSKIFKFLNIPLPEASILNPACIVDLNDGSKAIPIWYDKNEWIKEREMQFPGS
CCCCCCHHHHHHHHHCCCCCCHHHCCCEEEEEECCCCEEEEEEECCCHHHHHHHHCCCCC
RKFWQLCNLIHQSNWTFANNNPVLPIRNFWDFSQLLKALVPTNLVTGILLKSTIFDLLRL
HHHHHHHHHHHHCCCEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGLSNDERLIKFLNLQLKLYSQEDVHNTAALYGSTVLQMCQKPHGLWHLKKSMQVLSEAL
HCCCCHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
EHSLKNTGVDIFFEQQVNSIKYDDSRKIWQVCAKSKLGEVDYYADNVIYTPPPQSLLKHL
HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCEECCCHHHHHHHH
KNSLDENHNYRNTIKRLPKPSGALVFYSALKKKHIKLISSNHYQVVSDELGSLFISISED
HHHHHCCCCHHHHHHHCCCCCCCEEHHHHHHHHHHHHCCCCCEEEHHHCCCEEEEEEECC
GDGRAPKGEVTLIASIFTKTNDWFDLDKTAYSNKKKDYLKKISIVLENQFDISSENWLHK
CCCCCCCCCEEEEEEEHHCCCCCCCCCHHHHCCHHHHHHHHHHHHEECCCCCCCCCHHHH
ELATPMGFERWTNRPNGIVGGLGQNPDIFGLFGLSSRTPFEGLWLCGDSIYPGEGTAGVS
HHCCCCCHHHHCCCCCCEEECCCCCCCEEEEECCCCCCCCCEEEEECCEECCCCCCCCCC
QSALMVARQILASKGINDFHL
HHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA