| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
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The map label for this gene is 123966893
Identifier: 123966893
GI number: 123966893
Start: 1449109
End: 1449879
Strand: Reverse
Name: 123966893
Synonym: P9515_16601
Alternate gene names: NA
Gene position: 1449879-1449109 (Counterclockwise)
Preceding gene: 123966894
Following gene: 123966892
Centisome position: 85.08
GC content: 34.37
Gene sequence:
>771_bases ATGACAAAAAGAAAGGATATTCAGAATGAAAGCTTAGCAGAAATAGCGATAGATCCTGATGTTTTAGCTAAAGAATTATC TGTAGAGCTTGAAATTGATCCTTTAGAACAAATTGATAAGGATGGTTTCTCAAGAGGAGCTTTAAATAAAAATTTAGAGT GTGATCAAGCCTTAAAAATGCTCAAGGGTGACAGAGAGCAAAGAATACAAGGCTTAAGAATATTTTGTGAATATAGAGAT AAAAGATCTTTTTCTCTTTTACTGCCTTTACTAGATCAACCTTGCCCAGTAGAAAGAATGAGTGCTGTATATGCATTGGG TAGAAATCCATTTCCTAGCGCAGTTGAAAAATTAGTCAGCCTATTAGAAAACGATGACAATGCATATGTAAGAAGAGCTA CTGCTTGGAGTTTAGCTAATTATGATAATCAAATTGTTTTGAAGCCATTGATAAATTCATTAAAAAATGATGTGGCTTCA GTAAGATTATGGTCATCTAGTTCGCTAGCTGAAATTGGAAGTACCTCATCCTCGAATGCTCAATTGGCGGCTGAGCAACT TTTAATAAGCTTAAAAATAGATAATGAGCCTGTTGTTAGAAGCAACTGTATATGGTCGTTATGTAGGTTGTTCGAAAAGT TGGAGGATATATTGCAGGAGGAATTTGTTGATGAATGTACAAAAATTGCACTTTTTGACAAAGAGCCTTCAGTGATGGAG GAAGCTAAAACTGCTTTAGATTCAATGGGAATGCAAGGATTTTACAATTAA
Upstream 100 bases:
>100_bases CTTTTTGGGATAGCTTTTTTTGCAGTCAGTGCAAGAATTTGGCTTCCTGGAGATATGATGTTACCTGCTCCGATTAATTA ATCTTTATTTTCACTTGAAA
Downstream 100 bases:
>100_bases ATCTCTGACATTTATTAGACAATCAATATAAAAATTAAAATTTAGTTAATTTAAACAACTGAAACTAAAATTTTTGGTTA TTCTATACACAGTAATAGTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MTKRKDIQNESLAEIAIDPDVLAKELSVELEIDPLEQIDKDGFSRGALNKNLECDQALKMLKGDREQRIQGLRIFCEYRD KRSFSLLLPLLDQPCPVERMSAVYALGRNPFPSAVEKLVSLLENDDNAYVRRATAWSLANYDNQIVLKPLINSLKNDVAS VRLWSSSSLAEIGSTSSSNAQLAAEQLLISLKIDNEPVVRSNCIWSLCRLFEKLEDILQEEFVDECTKIALFDKEPSVME EAKTALDSMGMQGFYN
Sequences:
>Translated_256_residues MTKRKDIQNESLAEIAIDPDVLAKELSVELEIDPLEQIDKDGFSRGALNKNLECDQALKMLKGDREQRIQGLRIFCEYRD KRSFSLLLPLLDQPCPVERMSAVYALGRNPFPSAVEKLVSLLENDDNAYVRRATAWSLANYDNQIVLKPLINSLKNDVAS VRLWSSSSLAEIGSTSSSNAQLAAEQLLISLKIDNEPVVRSNCIWSLCRLFEKLEDILQEEFVDECTKIALFDKEPSVME EAKTALDSMGMQGFYN >Mature_255_residues TKRKDIQNESLAEIAIDPDVLAKELSVELEIDPLEQIDKDGFSRGALNKNLECDQALKMLKGDREQRIQGLRIFCEYRDK RSFSLLLPLLDQPCPVERMSAVYALGRNPFPSAVEKLVSLLENDDNAYVRRATAWSLANYDNQIVLKPLINSLKNDVASV RLWSSSSLAEIGSTSSSNAQLAAEQLLISLKIDNEPVVRSNCIWSLCRLFEKLEDILQEEFVDECTKIALFDKEPSVMEE AKTALDSMGMQGFYN
Specific function: Unknown
COG id: COG1413
COG function: function code C; FOG: HEAT repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28867; Mature: 28736
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKRKDIQNESLAEIAIDPDVLAKELSVELEIDPLEQIDKDGFSRGALNKNLECDQALKM CCCCCCCCCCCHHHHCCCHHHHHHHHCEEEEECHHHHHHHCCCCCCCCCCCCCHHHHHHH LKGDREQRIQGLRIFCEYRDKRSFSLLLPLLDQPCPVERMSAVYALGRNPFPSAVEKLVS HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHH LLENDDNAYVRRATAWSLANYDNQIVLKPLINSLKNDVASVRLWSSSSLAEIGSTSSSNA HHHCCCCHHEEHHHHHHHHCCCCCEEHHHHHHHHHHHHHHEEECCCCCHHHHCCCCCCCH QLAAEQLLISLKIDNEPVVRSNCIWSLCRLFEKLEDILQEEFVDECTKIALFDKEPSVME HHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHH EAKTALDSMGMQGFYN HHHHHHHHHCCCCCCC >Mature Secondary Structure TKRKDIQNESLAEIAIDPDVLAKELSVELEIDPLEQIDKDGFSRGALNKNLECDQALKM CCCCCCCCCCHHHHCCCHHHHHHHHCEEEEECHHHHHHHCCCCCCCCCCCCCHHHHHHH LKGDREQRIQGLRIFCEYRDKRSFSLLLPLLDQPCPVERMSAVYALGRNPFPSAVEKLVS HHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHH LLENDDNAYVRRATAWSLANYDNQIVLKPLINSLKNDVASVRLWSSSSLAEIGSTSSSNA HHHCCCCHHEEHHHHHHHHCCCCCEEHHHHHHHHHHHHHHEEECCCCCHHHHCCCCCCCH QLAAEQLLISLKIDNEPVVRSNCIWSLCRLFEKLEDILQEEFVDECTKIALFDKEPSVME HHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHH EAKTALDSMGMQGFYN HHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA