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The map label for this gene is yocR [H]

Identifier: 123966520

GI number: 123966520

Start: 1129901

End: 1131244

Strand: Direct

Name: yocR [H]

Synonym: P9515_12871

Alternate gene names: 123966520

Gene position: 1129901-1131244 (Clockwise)

Preceding gene: 123966518

Following gene: 123966521

Centisome position: 66.3

GC content: 35.64

Gene sequence:

>1344_bases
TTGGACTCAAAAATTTCTCAAAGAGAGCAATGGACAAGTAAGCTCGGATTTATTCTTGCTGCTGCTGGGAGTGCTGTGGG
ACTCGGCAACTTATGGGGATTTGCTTACCGGGCATCTCAAGGAGGAGGAGCTGCTTTTGTAGTTTTATACATACTAATTG
TATTAATTGTTTGTCTTCCAGTTTTTGTAGCCGAAATGGCTTTAGGAAGAAGTGCAATGGCAAGTTCATTACTGGCTCCG
GTGAAATTAGGAGGGAAGAATTGGTATCCACTAGGAATTCTTTTCTTTATAGCTCCTTTAGGTATTGCTTCATATTACTC
AGTGATAATGGGATGGACGGCAGACACTTTATTTCACTCATTATTTTTTGGATTACCAAAAAATCTAGGCGAAGCTGAAA
ATTTCTTTGGTTCTATAAGTACTGGAAGTAGTGTTTTGTTGGGGCATTTATTAAGTCTTCTACTTACAGCTTTTATAGTT
TCGTCAGGAATAAAAAAAGGGATCGAGAAAGTCACAAGATATTTTATGCCTATCCTCTTTATAATTATTGTAATTCTAGC
AATTTGGGCAACTTCCCTTTCAGGAGCATGGGAAGGATATAAAGCTTTCTTATTTAAGTTTGACTTTTCAGAATTAAGAA
ACCCTCAAACGATAAGGAATGCTTTTACTCAGGCATTCTTTTCTTTGAGTTTAGGTATTGGAATAATGGTTACCTACTCT
TCATACTTAAATAAAAAAAGTAATTTACCAAAATTAAGTATTGGTGTTGCTTCATTAGATACCTTAGTAGGACTAATGGC
GGGCTTAATTACTTTCCCAATAGTTTTAACCTTTGGCTTAAGTGATGCAATCTCTGAGTCAACAGTTGGGGCATTATTTA
TTTCTATCCCGACAGGATTAGGTTCCTATGGTTTTGCAGGTAGGTTAGTAGCTGTTGCTTTTTTTGCATTAGCTTATATA
GCTGCTATTACTTCTTCTGTTTCTCTTTTGGAAGTGCCTGTTTCCTCATTAATGGATAAATTTGGATTTAAAAGGGGTAA
ATCTGTATGGATAATCACTTTATTTCTATTCTTAGCGGGAATTCCATCAGCATTAAATTTAAATATCCTTGGAACGGTTG
ATTCAATATTTGGGGGCGTATTACTTATCTTCGGAGGATTCCTAGTATCGTTCTTCATGGGATGGGTGGTTCCAGGAAAG
TTCAATGAAGAACTTAATACTTCTAAAGTAGGCAAAAAAACTTATCTATATTTAAAGTTTATGTTGAGATGGGTATCGCC
TCCAATTATTGCTTTTGGATTAGTGATAAGTATTTTTGACTTACTTAAAAGCTGGGTATCTTGA

Upstream 100 bases:

>100_bases
TGGAAGTATTTAATTATTAAAAAATAAGTTTTTATTCAAAATAATTATTAATTATTTTTATAAATAAGTTATAAATCAAC
TATAAATATCGTTTAATATT

Downstream 100 bases:

>100_bases
GAGAAAAAACGGAATATATTCTTAATTTTTTAATATCGGTTAATAAAGTTTATTTTATGAAAGTAACTAATATAAAAAAT
TTATTAGCTTGCAAGATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MDSKISQREQWTSKLGFILAAAGSAVGLGNLWGFAYRASQGGGAAFVVLYILIVLIVCLPVFVAEMALGRSAMASSLLAP
VKLGGKNWYPLGILFFIAPLGIASYYSVIMGWTADTLFHSLFFGLPKNLGEAENFFGSISTGSSVLLGHLLSLLLTAFIV
SSGIKKGIEKVTRYFMPILFIIIVILAIWATSLSGAWEGYKAFLFKFDFSELRNPQTIRNAFTQAFFSLSLGIGIMVTYS
SYLNKKSNLPKLSIGVASLDTLVGLMAGLITFPIVLTFGLSDAISESTVGALFISIPTGLGSYGFAGRLVAVAFFALAYI
AAITSSVSLLEVPVSSLMDKFGFKRGKSVWIITLFLFLAGIPSALNLNILGTVDSIFGGVLLIFGGFLVSFFMGWVVPGK
FNEELNTSKVGKKTYLYLKFMLRWVSPPIIAFGLVISIFDLLKSWVS

Sequences:

>Translated_447_residues
MDSKISQREQWTSKLGFILAAAGSAVGLGNLWGFAYRASQGGGAAFVVLYILIVLIVCLPVFVAEMALGRSAMASSLLAP
VKLGGKNWYPLGILFFIAPLGIASYYSVIMGWTADTLFHSLFFGLPKNLGEAENFFGSISTGSSVLLGHLLSLLLTAFIV
SSGIKKGIEKVTRYFMPILFIIIVILAIWATSLSGAWEGYKAFLFKFDFSELRNPQTIRNAFTQAFFSLSLGIGIMVTYS
SYLNKKSNLPKLSIGVASLDTLVGLMAGLITFPIVLTFGLSDAISESTVGALFISIPTGLGSYGFAGRLVAVAFFALAYI
AAITSSVSLLEVPVSSLMDKFGFKRGKSVWIITLFLFLAGIPSALNLNILGTVDSIFGGVLLIFGGFLVSFFMGWVVPGK
FNEELNTSKVGKKTYLYLKFMLRWVSPPIIAFGLVISIFDLLKSWVS
>Mature_447_residues
MDSKISQREQWTSKLGFILAAAGSAVGLGNLWGFAYRASQGGGAAFVVLYILIVLIVCLPVFVAEMALGRSAMASSLLAP
VKLGGKNWYPLGILFFIAPLGIASYYSVIMGWTADTLFHSLFFGLPKNLGEAENFFGSISTGSSVLLGHLLSLLLTAFIV
SSGIKKGIEKVTRYFMPILFIIIVILAIWATSLSGAWEGYKAFLFKFDFSELRNPQTIRNAFTQAFFSLSLGIGIMVTYS
SYLNKKSNLPKLSIGVASLDTLVGLMAGLITFPIVLTFGLSDAISESTVGALFISIPTGLGSYGFAGRLVAVAFFALAYI
AAITSSVSLLEVPVSSLMDKFGFKRGKSVWIITLFLFLAGIPSALNLNILGTVDSIFGGVLLIFGGFLVSFFMGWVVPGK
FNEELNTSKVGKKTYLYLKFMLRWVSPPIIAFGLVISIFDLLKSWVS

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507041, Length=496, Percent_Identity=23.991935483871, Blast_Score=113, Evalue=5e-25,
Organism=Homo sapiens, GI289191351, Length=508, Percent_Identity=24.0157480314961, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI4557046, Length=508, Percent_Identity=24.0157480314961, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI289191377, Length=508, Percent_Identity=24.0157480314961, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI171184408, Length=401, Percent_Identity=27.431421446384, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI171184406, Length=401, Percent_Identity=27.431421446384, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI171184404, Length=401, Percent_Identity=27.431421446384, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI58219014, Length=306, Percent_Identity=29.0849673202614, Blast_Score=105, Evalue=7e-23,
Organism=Homo sapiens, GI21361581, Length=388, Percent_Identity=26.0309278350515, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI11181770, Length=300, Percent_Identity=29, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI4507043, Length=385, Percent_Identity=24.9350649350649, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI33354281, Length=305, Percent_Identity=27.2131147540984, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI188528618, Length=382, Percent_Identity=24.6073298429319, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI194018524, Length=303, Percent_Identity=26.0726072607261, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI51468073, Length=307, Percent_Identity=26.0586319218241, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI7657587, Length=399, Percent_Identity=25.062656641604, Blast_Score=92, Evalue=9e-19,
Organism=Homo sapiens, GI134304856, Length=413, Percent_Identity=25.6658595641646, Blast_Score=90, Evalue=6e-18,
Organism=Homo sapiens, GI197276623, Length=356, Percent_Identity=26.4044943820225, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI54607094, Length=356, Percent_Identity=26.4044943820225, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI12408638, Length=277, Percent_Identity=27.7978339350181, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI5032097, Length=354, Percent_Identity=25.4237288135593, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI92859670, Length=217, Percent_Identity=33.1797235023041, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI21361693, Length=113, Percent_Identity=34.5132743362832, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI218563756, Length=297, Percent_Identity=25.2525252525253, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI197276625, Length=134, Percent_Identity=34.3283582089552, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI289191353, Length=314, Percent_Identity=23.5668789808917, Blast_Score=69, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17555248, Length=423, Percent_Identity=23.6406619385343, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI25146584, Length=420, Percent_Identity=25.2380952380952, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17554804, Length=371, Percent_Identity=25.8760107816712, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17569475, Length=412, Percent_Identity=24.5145631067961, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI133952791, Length=138, Percent_Identity=31.1594202898551, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71998244, Length=202, Percent_Identity=28.7128712871287, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24652942, Length=384, Percent_Identity=28.125, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI45551088, Length=384, Percent_Identity=28.125, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI281363702, Length=487, Percent_Identity=27.1047227926078, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI17136952, Length=389, Percent_Identity=26.4781491002571, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI281364394, Length=397, Percent_Identity=26.9521410579345, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28574704, Length=397, Percent_Identity=26.9521410579345, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI17136950, Length=397, Percent_Identity=26.9521410579345, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI28574702, Length=397, Percent_Identity=26.9521410579345, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24661428, Length=403, Percent_Identity=26.5508684863524, Blast_Score=115, Evalue=6e-26,
Organism=Drosophila melanogaster, GI19921936, Length=396, Percent_Identity=25.2525252525253, Blast_Score=112, Evalue=7e-25,
Organism=Drosophila melanogaster, GI24582567, Length=482, Percent_Identity=25.7261410788382, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI281363700, Length=349, Percent_Identity=28.080229226361, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24762620, Length=427, Percent_Identity=26.6978922716628, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI281365034, Length=396, Percent_Identity=23.7373737373737, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24639514, Length=508, Percent_Identity=25.9842519685039, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI221329674, Length=508, Percent_Identity=25.9842519685039, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI45551183, Length=335, Percent_Identity=26.5671641791045, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI45550877, Length=335, Percent_Identity=26.5671641791045, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24639516, Length=301, Percent_Identity=29.2358803986711, Blast_Score=92, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24655079, Length=303, Percent_Identity=26.4026402640264, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI281364136, Length=418, Percent_Identity=24.6411483253589, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI19921352, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24584353, Length=191, Percent_Identity=26.7015706806283, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24582569, Length=440, Percent_Identity=23.8636363636364, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48205; Mature: 48205

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSKISQREQWTSKLGFILAAAGSAVGLGNLWGFAYRASQGGGAAFVVLYILIVLIVCLP
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
VFVAEMALGRSAMASSLLAPVKLGGKNWYPLGILFFIAPLGIASYYSVIMGWTADTLFHS
HHHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFFGLPKNLGEAENFFGSISTGSSVLLGHLLSLLLTAFIVSSGIKKGIEKVTRYFMPILF
HHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIIVILAIWATSLSGAWEGYKAFLFKFDFSELRNPQTIRNAFTQAFFSLSLGIGIMVTYS
HHHHHHHHHHHHHCCCHHHHHHHHHEECHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHH
SYLNKKSNLPKLSIGVASLDTLVGLMAGLITFPIVLTFGLSDAISESTVGALFISIPTGL
HHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEECCCC
GSYGFAGRLVAVAFFALAYIAAITSSVSLLEVPVSSLMDKFGFKRGKSVWIITLFLFLAG
CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
IPSALNLNILGTVDSIFGGVLLIFGGFLVSFFMGWVVPGKFNEELNTSKVGKKTYLYLKF
CCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHH
MLRWVSPPIIAFGLVISIFDLLKSWVS
HHHHHCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]