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The map label for this gene is secD [H]

Identifier: 123966245

GI number: 123966245

Start: 905383

End: 906843

Strand: Reverse

Name: secD [H]

Synonym: P9515_10121

Alternate gene names: 123966245

Gene position: 906843-905383 (Counterclockwise)

Preceding gene: 123966246

Following gene: 123966244

Centisome position: 53.21

GC content: 29.98

Gene sequence:

>1461_bases
ATGAAAAAAAGGCAAGGTTGGTTTTTTTTTATTATTTTCTTACTGACTTTATCTATTTATTTATTAATTAATTTCCCATT
ACAATTAGGTCTAGATTTAAAAGGAGGTTCTCAACTAACTCTTCAATTAGTTAAAGAGGATGGGAAAGTTACAAAAGAAG
AGTTAGAGGCTGTCAATGCAGTTTTAGATAAACGTGTAAATAATTTAGGAGTGGCAGAGTCTAATTTACAAACCTTAGGA
CGAGATCAATTAATTTTAGAGTTACCAGGAGAGCAAAACCCTTTATCAGCTTCAAGGATATTAGGTAAAACTGCTTTATT
AGAATTTAGAACTCAAAAAGAAAACACAATATCTGAACTAAATAATCTTCAAATACAGAGGATAAAAATAAACGATTTGA
TCGATCAATTCAATATTGATAATAAAAGAAATGTAGATATTTCTTTAAACTTTTATGATAATCTAACTGAATTAGAAAAG
GATATTAATTATTCTTCTAAAAATCAGCAATTATTTGATAGATTGGTCGATACTAAAAAATTTATAAGTAATGAAATTGT
AAATCTGTTCAACAAAACAGATTTATCAGGAAAAGATTTAGTAAATGCTGGTAGAAGGCAAGAGCAAACTAATAACAATT
GGGAGGTTTTATTATCCTTTAGTAGTGAAGGTGGTGACAAATTTGCGGAAATTACTAAATCGATAGCAGGTACTGATCAA
CTTTTGTCAATTGTTCTTGATGGGGAATCTATCAGCGAAGCTAGTGTGGGAAGTCAATTTATAAATACTGGCATCACGGG
TGGGTCAGCAACTATAAGTGGAAATTTTTCAGCTGAGAACGCCAGAGAACTAGAAGTTCAACTCAAAGGTGGTTCTTTGC
CTTTACCTATTGAAATTGTTGAAACTAATACAATAGGTCCTTTACTTGGATCGAAAAATATTTTGAAGAGTCTTTATGCC
GCTATTTGTGGATTGATGTTTGTTGGAATATTTATGATTTTTAATTATAGAATTCTTGGATTTGTTTCTGTAATTTCGTT
AATTTTTTACGGGTTTTTCAACTTAGCTCTTTATTCTTTAATCCCCGTGACTTTAACATTACCAGGAATTGCTGGATTAA
TTTTAAGTATTGGTATGGCCGTAGATGCAAATGTTTTAATTTTTGAAAGGATTAGAGAAGAACTTTTAAATGGTAATACT
CTTATAAGATCAATTGATAGTGGATTCCTAAGAGCTAATTCATCCATTATCGATGGTCATATTACAACCCTTGTAAGTTG
TTTAGTTTTGTTTTTCTTAGGAACTAATTTTGTAAAAGGATTTGCTGCAACACTTGGCATTGGTGTTGTGATAAGTTTAT
TTACCTCATTAAATTGCTCCAAAACAATTTTAAGATTTTTGACTACTTATCAATCTTTAAGACAAAAAAATCTGTATTTA
AATAGGTCTAATCCCCTCTAA

Upstream 100 bases:

>100_bases
TCCTACTCCTTATAATGGTAATTTAGAAAATTTAACAATAATTCAACCGCATCAAATAGTCGAAAAAGTAGAAGAAATAA
TCAATGGGAGTATTTAAGAA

Downstream 100 bases:

>100_bases
TTTAAATTATTAATTATTTAGTTCATGGCTTCATTTAATTTTAACTTAATTAAAAATAAAAATAATATATTTGGATTTTC
ATCTTTTCTTATATTGTTAA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MKKRQGWFFFIIFLLTLSIYLLINFPLQLGLDLKGGSQLTLQLVKEDGKVTKEELEAVNAVLDKRVNNLGVAESNLQTLG
RDQLILELPGEQNPLSASRILGKTALLEFRTQKENTISELNNLQIQRIKINDLIDQFNIDNKRNVDISLNFYDNLTELEK
DINYSSKNQQLFDRLVDTKKFISNEIVNLFNKTDLSGKDLVNAGRRQEQTNNNWEVLLSFSSEGGDKFAEITKSIAGTDQ
LLSIVLDGESISEASVGSQFINTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNTIGPLLGSKNILKSLYA
AICGLMFVGIFMIFNYRILGFVSVISLIFYGFFNLALYSLIPVTLTLPGIAGLILSIGMAVDANVLIFERIREELLNGNT
LIRSIDSGFLRANSSIIDGHITTLVSCLVLFFLGTNFVKGFAATLGIGVVISLFTSLNCSKTILRFLTTYQSLRQKNLYL
NRSNPL

Sequences:

>Translated_486_residues
MKKRQGWFFFIIFLLTLSIYLLINFPLQLGLDLKGGSQLTLQLVKEDGKVTKEELEAVNAVLDKRVNNLGVAESNLQTLG
RDQLILELPGEQNPLSASRILGKTALLEFRTQKENTISELNNLQIQRIKINDLIDQFNIDNKRNVDISLNFYDNLTELEK
DINYSSKNQQLFDRLVDTKKFISNEIVNLFNKTDLSGKDLVNAGRRQEQTNNNWEVLLSFSSEGGDKFAEITKSIAGTDQ
LLSIVLDGESISEASVGSQFINTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNTIGPLLGSKNILKSLYA
AICGLMFVGIFMIFNYRILGFVSVISLIFYGFFNLALYSLIPVTLTLPGIAGLILSIGMAVDANVLIFERIREELLNGNT
LIRSIDSGFLRANSSIIDGHITTLVSCLVLFFLGTNFVKGFAATLGIGVVISLFTSLNCSKTILRFLTTYQSLRQKNLYL
NRSNPL
>Mature_486_residues
MKKRQGWFFFIIFLLTLSIYLLINFPLQLGLDLKGGSQLTLQLVKEDGKVTKEELEAVNAVLDKRVNNLGVAESNLQTLG
RDQLILELPGEQNPLSASRILGKTALLEFRTQKENTISELNNLQIQRIKINDLIDQFNIDNKRNVDISLNFYDNLTELEK
DINYSSKNQQLFDRLVDTKKFISNEIVNLFNKTDLSGKDLVNAGRRQEQTNNNWEVLLSFSSEGGDKFAEITKSIAGTDQ
LLSIVLDGESISEASVGSQFINTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNTIGPLLGSKNILKSLYA
AICGLMFVGIFMIFNYRILGFVSVISLIFYGFFNLALYSLIPVTLTLPGIAGLILSIGMAVDANVLIFERIREELLNGNT
LIRSIDSGFLRANSSIIDGHITTLVSCLVLFFLGTNFVKGFAATLGIGVVISLFTSLNCSKTILRFLTTYQSLRQKNLYL
NRSNPL

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=474, Percent_Identity=33.3333333333333, Blast_Score=202, Evalue=3e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 53779; Mature: 53779

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRQGWFFFIIFLLTLSIYLLINFPLQLGLDLKGGSQLTLQLVKEDGKVTKEELEAVNA
CCCCCCHHHHHHHHHHHHHHHHHHCCHHCCEECCCCCCEEHEEECCCCCCCHHHHHHHHH
VLDKRVNNLGVAESNLQTLGRDQLILELPGEQNPLSASRILGKTALLEFRTQKENTISEL
HHHHHHHHCCCCHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
NNLQIQRIKINDLIDQFNIDNKRNVDISLNFYDNLTELEKDINYSSKNQQLFDRLVDTKK
CCCEEEEEEHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHH
FISNEIVNLFNKTDLSGKDLVNAGRRQEQTNNNWEVLLSFSSEGGDKFAEITKSIAGTDQ
HHHHHHHHHHHCCCCCCHHHHHCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCHHH
LLSIVLDGESISEASVGSQFINTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIV
HHHHEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEEEE
ETNTIGPLLGSKNILKSLYAAICGLMFVGIFMIFNYRILGFVSVISLIFYGFFNLALYSL
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPVTLTLPGIAGLILSIGMAVDANVLIFERIREELLNGNTLIRSIDSGFLRANSSIIDGH
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCHHCCCCCEECHH
ITTLVSCLVLFFLGTNFVKGFAATLGIGVVISLFTSLNCSKTILRFLTTYQSLRQKNLYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE
NRSNPL
ECCCCC
>Mature Secondary Structure
MKKRQGWFFFIIFLLTLSIYLLINFPLQLGLDLKGGSQLTLQLVKEDGKVTKEELEAVNA
CCCCCCHHHHHHHHHHHHHHHHHHCCHHCCEECCCCCCEEHEEECCCCCCCHHHHHHHHH
VLDKRVNNLGVAESNLQTLGRDQLILELPGEQNPLSASRILGKTALLEFRTQKENTISEL
HHHHHHHHCCCCHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
NNLQIQRIKINDLIDQFNIDNKRNVDISLNFYDNLTELEKDINYSSKNQQLFDRLVDTKK
CCCEEEEEEHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHH
FISNEIVNLFNKTDLSGKDLVNAGRRQEQTNNNWEVLLSFSSEGGDKFAEITKSIAGTDQ
HHHHHHHHHHHCCCCCCHHHHHCCHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCHHH
LLSIVLDGESISEASVGSQFINTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIV
HHHHEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEEEE
ETNTIGPLLGSKNILKSLYAAICGLMFVGIFMIFNYRILGFVSVISLIFYGFFNLALYSL
ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPVTLTLPGIAGLILSIGMAVDANVLIFERIREELLNGNTLIRSIDSGFLRANSSIIDGH
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCHHCCCCCEECHH
ITTLVSCLVLFFLGTNFVKGFAATLGIGVVISLFTSLNCSKTILRFLTTYQSLRQKNLYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEE
NRSNPL
ECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]