| Definition | Prochlorococcus marinus str. MIT 9515, complete genome. |
|---|---|
| Accession | NC_008817 |
| Length | 1,704,176 |
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The map label for this gene is rsbW
Identifier: 123966239
GI number: 123966239
Start: 900469
End: 900912
Strand: Reverse
Name: rsbW
Synonym: P9515_10061
Alternate gene names: NA
Gene position: 900912-900469 (Counterclockwise)
Preceding gene: 123966240
Following gene: 123966235
Centisome position: 52.86
GC content: 31.76
Gene sequence:
>444_bases ATGTCCTTTTTTCAGGGCAAAATTCTTTTGAATTTTATTACAAACTTACTATATAGGCCAACAATTAACTGGTCTAATTT TGAATTAGACTCATCAATACAACTAAATGATTTTGTCGATTTATTGTTAGAACCCTTAAAGACTTCGCAATATTCATATC GAACAAGACTTGGTTTGCATGAAGCTCTTATAAATGCTGTTACCCATGGCAATAAATTAGATCCTAAAAAATCAATCAGA GTTCGAAGAATTATTACTCCTAACTGGTGCGTTTGGCAGATTCAAGATCAAGGTAATGGGTTAGAAATAAAAAAAAGAAT TTATAAATTGCCTGAAAAACTTAGTGCGTTGAATGGGCGTGGTCTATATATCATAAACGAATGTTTTGATGATATTAGAT GGAGTAATAAAGGTAACCGACTCCAATTGGCATTAAAGAGATGA
Upstream 100 bases:
>100_bases TCGATACTAAGGCATCCAGCAATTTCTTTGAGGCATAATAATATTCTTTGATCTTGAGCTCTTTGATAAGTTAATATGTG ATTAATATAGTCACAAAGTT
Downstream 100 bases:
>100_bases GTTTTTACTTGGACAGGGTTTATCTATATTAATTCCTTTAAGCCATTTTATACTTTCTTCCAAATAATTTATGGTATCTT TTTCATTCTCTGAAATTAGT
Product: anti-sigma regulatory factor (Ser/Thr protein kinase)
Products: NA
Alternate protein names: PmgA Protein; Photomixotrophic Growth Related Protein PmgA-Like Protein; Photomixotrophic Growth-Like Protein PmgA; Photomixotrophic Growth Related Protein
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MSFFQGKILLNFITNLLYRPTINWSNFELDSSIQLNDFVDLLLEPLKTSQYSYRTRLGLHEALINAVTHGNKLDPKKSIR VRRIITPNWCVWQIQDQGNGLEIKKRIYKLPEKLSALNGRGLYIINECFDDIRWSNKGNRLQLALKR
Sequences:
>Translated_147_residues MSFFQGKILLNFITNLLYRPTINWSNFELDSSIQLNDFVDLLLEPLKTSQYSYRTRLGLHEALINAVTHGNKLDPKKSIR VRRIITPNWCVWQIQDQGNGLEIKKRIYKLPEKLSALNGRGLYIINECFDDIRWSNKGNRLQLALKR >Mature_146_residues SFFQGKILLNFITNLLYRPTINWSNFELDSSIQLNDFVDLLLEPLKTSQYSYRTRLGLHEALINAVTHGNKLDPKKSIRV RRIITPNWCVWQIQDQGNGLEIKKRIYKLPEKLSALNGRGLYIINECFDDIRWSNKGNRLQLALKR
Specific function: Unknown
COG id: COG2172
COG function: function code T; Anti-sigma regulatory factor (Ser/Thr protein kinase)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17249; Mature: 17118
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFFQGKILLNFITNLLYRPTINWSNFELDSSIQLNDFVDLLLEPLKTSQYSYRTRLGLH CCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH EALINAVTHGNKLDPKKSIRVRRIITPNWCVWQIQDQGNGLEIKKRIYKLPEKLSALNGR HHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC GLYIINECFDDIRWSNKGNRLQLALKR CEEEHHHHHHHHHCCCCCCEEEEEEEC >Mature Secondary Structure SFFQGKILLNFITNLLYRPTINWSNFELDSSIQLNDFVDLLLEPLKTSQYSYRTRLGLH CCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH EALINAVTHGNKLDPKKSIRVRRIITPNWCVWQIQDQGNGLEIKKRIYKLPEKLSALNGR HHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCC GLYIINECFDDIRWSNKGNRLQLALKR CEEEHHHHHHHHHCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA